Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a17
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 30 0.22
07_01_0991 - 8358309-8358338,8359115-8359393,8359964-8360092,836... 27 1.6
04_03_0314 - 14238620-14240128 27 1.6
02_05_0979 + 33268294-33269595 27 1.6
12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151... 27 2.1
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948 27 2.1
06_01_0471 - 3341839-3341881,3341987-3342080,3344724-3344914,334... 27 2.7
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 26 3.6
08_02_0751 + 20789843-20789908,20791152-20791313,20791516-207915... 26 4.8
06_01_0351 + 2537022-2538281 26 4.8
01_03_0108 - 12628711-12629178 26 4.8
07_03_1447 + 26587436-26587497,26588479-26589130,26589247-265893... 25 6.3
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 25 6.3
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 25 6.3
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 25 8.3
12_01_0791 + 7234021-7234221,7234801-7234862,7235441-7235481,723... 25 8.3
06_03_0383 - 20154045-20154712,20154969-20155122,20155780-201558... 25 8.3
04_01_0573 + 7436146-7436701,7436786-7437204 25 8.3
03_06_0579 + 34870958-34874578 25 8.3
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404... 25 8.3
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 151 LWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT 50
LW EHF L G + PHR + IG DS+ T
Sbjct: 67 LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100
>07_01_0991 -
8358309-8358338,8359115-8359393,8359964-8360092,
8360317-8360598,8361400-8361525,8363490-8363870
Length = 408
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 133 NVPTATTAIAPSAKALAADVL 195
++PT TTA +P+ KAL D+L
Sbjct: 25 HLPTTTTAASPALKALGEDLL 45
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 118 HQVKRNVPTATTAIAPSAKALAADV 192
H + N+ T A+ P+A+ALAAD+
Sbjct: 145 HPLSPNLSTLAVALTPAAEALAADL 169
>02_05_0979 + 33268294-33269595
Length = 433
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 93 RWGNLPFLPPSKEKCSDRHNRHRA*C*SISSGCVAALRIRILGHRKMAIYLWQRKT 260
+W +L PP +E + RH H S C + ++I GH YLW T
Sbjct: 94 QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLWNPST 147
>12_02_0037 -
12613686-12614318,12614792-12614878,12614985-12615176,
12617246-12617371,12617479-12617565,12617994-12618458,
12618868-12618947,12619739-12619751
Length = 560
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 32 YFSAALCSATIFADSRLELRAVGEPSFL 115
YF A LC T+ +S + + AV P FL
Sbjct: 404 YFVATLCMCTLLVESMMMIIAVIVPDFL 431
>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
Length = 712
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 84 SSVRWGNLPFLPPSKEKCSDRHNRHRA 164
S +RW FLPPS + SD H + RA
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRA 524
>06_01_0471 -
3341839-3341881,3341987-3342080,3344724-3344914,
3345025-3345248
Length = 183
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 177 CFSTRRDGGCGG 142
C RRDGGCGG
Sbjct: 87 CLHRRRDGGCGG 98
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 54 LLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHN 152
L SSP+ + S + G LPFL P KC + N
Sbjct: 108 LYTSSPMNSGSCRKTGYLPFL-PQPPKCEQQQN 139
>08_02_0751 +
20789843-20789908,20791152-20791313,20791516-20791566,
20792096-20792160,20792385-20792459,20792603-20792780,
20793171-20793353,20793436-20793549,20793627-20793736,
20793826-20793904,20794035-20794172
Length = 406
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 136 VPTATTAIAPSAKALAA 186
VPTATTA AP+A AA
Sbjct: 123 VPTATTASAPAAAVTAA 139
>06_01_0351 + 2537022-2538281
Length = 419
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 57 LLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHRA-*C*SISSGCVAALRI-RILGH 224
L++S R L RW NLP + PS R R +SSGC +++ ++GH
Sbjct: 282 LVASNDRLLMVRRWINLPPIYPSDSGIVKRTRRFEVFEAADLSSGCGRWIKVDTLMGH 339
>01_03_0108 - 12628711-12629178
Length = 155
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 64 LRRFAP*APCGGGTFLSCH 120
LR+ P A CG GTF++ H
Sbjct: 118 LRKECPNAECGAGTFMANH 136
>07_03_1447 +
26587436-26587497,26588479-26589130,26589247-26589335,
26589794-26589858,26589967-26590022,26590107-26590227,
26590316-26590390,26590689-26590742,26590830-26590924,
26591004-26591178,26591293-26591537
Length = 562
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -1
Query: 156 GGCGGRNISLYLVARKEGSPTARSSRRESAKIVAEHSAAEK*FCSQNNTYV 4
GG L+ +A+ G P R +SA + A AA C++ ++V
Sbjct: 455 GGASSNERILHSIAQIFGCPVFTVQRPDSASLGAALRAAHGWLCNEEGSFV 505
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 174 FSTRRDGGCGGRNISLYLVARKEGSPTARSSRRESAKIVAEHSA 43
F R DGG N+ + + A GSP R + E+ + A ++A
Sbjct: 431 FLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTALGAAYAA 474
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 76 AP*APCGGGTFLSCHQVKRNVPTATTAIAPSAKALA 183
AP PC + KR+ ATT +AP A A
Sbjct: 424 APQQPCSDAVRCNDDGEKRSAEVATTEVAPDGSASA 459
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 30 IIFPLHYVLLLSSPIRALSSV 92
++F L Y+LL S+PIR + V
Sbjct: 603 LLFKLQYLLLRSNPIREIPEV 623
>12_01_0791 +
7234021-7234221,7234801-7234862,7235441-7235481,
7235711-7235940
Length = 177
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1
Query: 174 FSTRRDGGCGGR 139
F+ +R+GGCGGR
Sbjct: 162 FNCQREGGCGGR 173
>06_03_0383 -
20154045-20154712,20154969-20155122,20155780-20155896,
20157395-20157466
Length = 336
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -1
Query: 186 RC*CFSTRRDGGCGGRNISLYLVARKEGSPTARSSRRESAKIVAEHSAA 40
RC C G GGR + V+ GS +S R SA A A
Sbjct: 261 RCGCAGAADGGRGGGRGPTTAAVSTARGSAAIDTSSRASASAHASRPPA 309
>04_01_0573 + 7436146-7436701,7436786-7437204
Length = 324
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 157 WRLWRSEHFSLLGGKKGRFPHRTELKAR 74
WR W + + G KKG+ P E AR
Sbjct: 173 WRAWHLRNEMMHGNKKGKRPMFEEPPAR 200
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 174 SISSGCVAALRIRILGHRKMAIYLWQR 254
SI + L+I +LG M +YLW R
Sbjct: 1171 SIKANTSEQLKIALLGVCSMTMYLWNR 1197
>02_04_0538 +
23739830-23740126,23740205-23740261,23740344-23740441,
23740565-23740640,23741316-23741345,23741833-23741961,
23742077-23742123,23742477-23742531,23742939-23743038,
23743568-23743674,23743760-23743906,23744232-23744378,
23744473-23744526,23744873-23744914
Length = 461
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -1
Query: 171 STRRDGGCGG 142
S RRDGGCGG
Sbjct: 68 SCRRDGGCGG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,035,528
Number of Sequences: 37544
Number of extensions: 150672
Number of successful extensions: 455
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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