Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a17
(267 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 30 0.26
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 30 0.26
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 26 3.2
AF039046-6|AAB94216.1| 66|Caenorhabditis elegans Caenacin (cae... 26 3.2
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 25 5.6
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 25 5.6
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 25 5.6
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 25 5.6
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 25 5.6
Z11115-18|CAI46594.1| 243|Caenorhabditis elegans Hypothetical p... 25 7.4
Z11115-17|CAA77455.3| 228|Caenorhabditis elegans Hypothetical p... 25 7.4
AY513235-1|AAS21678.1| 228|Caenorhabditis elegans thiamine pyro... 25 7.4
U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical pr... 25 9.7
DQ407523-1|ABD85015.1| 856|Caenorhabditis elegans OGA-1c protein. 25 9.7
DQ407522-1|ABD85014.1| 854|Caenorhabditis elegans OGA-1b protein. 25 9.7
DQ407521-1|ABD85013.1| 870|Caenorhabditis elegans OGA-1d protein. 25 9.7
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 29.9 bits (64), Expect = 0.26
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 9 KYYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHR 161
KY+F ++I ++ LLSS + S+++GN + EK S HR
Sbjct: 1242 KYHFESEITLNSSFMFLLSSSFQTARSLQFGNSSYNKVIDEKLSLNSIAHR 1292
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 29.9 bits (64), Expect = 0.26
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 9 KYYFANKIIFPLHYVLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHR 161
KY+F ++I ++ LLSS + S+++GN + EK S HR
Sbjct: 1242 KYHFESEITLNSSFMFLLSSSFQTARSLQFGNSSYNKVIDEKLSLNSIAHR 1292
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 150 CGGRNISLYLVARKEGSPTARSSRRESAKIVAEHSAAEK*FCSQNNTYV 4
CGG S + +K G P+ SS + + K + AA+ C + + YV
Sbjct: 1373 CGGGKASAIVAEKKSGKPSTFSS-KPNGKEDGDDEAAD--VCDRGSAYV 1418
>AF039046-6|AAB94216.1| 66|Caenorhabditis elegans Caenacin
(caenorhabditis bacteriocin)protein 4 protein.
Length = 66
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 42 LHYVLLLSSPIRALSSVRWGNLPF 113
L Y+L+L I A+SS +WG P+
Sbjct: 2 LRYILVLLVAIIAMSSAQWGYGPY 25
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 199 PCELEFLVIAKWQFICGNE 255
PCEL +V+AK+QF N+
Sbjct: 4786 PCELADVVVAKYQFEVPNQ 4804
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 199 PCELEFLVIAKWQFICGNE 255
PCEL +V+AK+QF N+
Sbjct: 5315 PCELADVVVAKYQFEVPNQ 5333
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 199 PCELEFLVIAKWQFICGNE 255
PCEL +V+AK+QF N+
Sbjct: 4996 PCELADVVVAKYQFEVPNQ 5014
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 199 PCELEFLVIAKWQFICGNE 255
PCEL +V+AK+QF N+
Sbjct: 4786 PCELADVVVAKYQFEVPNQ 4804
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 199 PCELEFLVIAKWQFICGNE 255
PCEL +V+AK+QF N+
Sbjct: 5315 PCELADVVVAKYQFEVPNQ 5333
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 199 PCELEFLVIAKWQFICGNE 255
PCEL +V+AK+QF N+
Sbjct: 4996 PCELADVVVAKYQFEVPNQ 5014
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 199 PCELEFLVIAKWQFICGNE 255
PCEL +V+AK+QF N+
Sbjct: 4205 PCELADVVVAKYQFEVPNQ 4223
>Z11115-18|CAI46594.1| 243|Caenorhabditis elegans Hypothetical
protein ZK637.9b protein.
Length = 243
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 148 WRSEHFSLLGGKKGRFPH 95
W E+ +LGG GRF H
Sbjct: 111 WEFENIVVLGGLNGRFDH 128
>Z11115-17|CAA77455.3| 228|Caenorhabditis elegans Hypothetical
protein ZK637.9a protein.
Length = 228
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 148 WRSEHFSLLGGKKGRFPH 95
W E+ +LGG GRF H
Sbjct: 111 WEFENIVVLGGLNGRFDH 128
>AY513235-1|AAS21678.1| 228|Caenorhabditis elegans thiamine
pyrophosphokinase protein.
Length = 228
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 148 WRSEHFSLLGGKKGRFPH 95
W E+ +LGG GRF H
Sbjct: 111 WEFENIVVLGGLNGRFDH 128
>U28742-3|AAA68333.3| 837|Caenorhabditis elegans Hypothetical
protein T20B5.3 protein.
Length = 837
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 7 VSIILRTKLFFRCTMFCYYLRRF 75
+ ++L K+F MFC+ +R F
Sbjct: 596 IEVLLSNKIFLPLCMFCFDIRPF 618
>DQ407523-1|ABD85015.1| 856|Caenorhabditis elegans OGA-1c protein.
Length = 856
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 7 VSIILRTKLFFRCTMFCYYLRRF 75
+ ++L K+F MFC+ +R F
Sbjct: 613 IEVLLSNKIFLPLCMFCFDIRPF 635
>DQ407522-1|ABD85014.1| 854|Caenorhabditis elegans OGA-1b protein.
Length = 854
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 7 VSIILRTKLFFRCTMFCYYLRRF 75
+ ++L K+F MFC+ +R F
Sbjct: 613 IEVLLSNKIFLPLCMFCFDIRPF 635
>DQ407521-1|ABD85013.1| 870|Caenorhabditis elegans OGA-1d protein.
Length = 870
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 7 VSIILRTKLFFRCTMFCYYLRRF 75
+ ++L K+F MFC+ +R F
Sbjct: 629 IEVLLSNKIFLPLCMFCFDIRPF 651
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,517,225
Number of Sequences: 27780
Number of extensions: 114295
Number of successful extensions: 302
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -