Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a17
         (267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   4.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   4.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    19   8.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    19   8.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   8.0  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 160 RWRLWRSEHFSLLGGK 113
           RW L   E   L+GG+
Sbjct: 261 RWNLTSGERVGLVGGR 276


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 148 WRSEHFSLLGG 116
           W SEHF   GG
Sbjct: 333 WNSEHFFEYGG 343


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 58  YYLRRFAP*AP 90
           YYL +FAP  P
Sbjct: 182 YYLHQFAPEQP 192


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 58  YYLRRFAP*AP 90
           YYL +FAP  P
Sbjct: 182 YYLHQFAPEQP 192


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 153  GCGGRNISLYLVARKE 106
            GC  RN+ LY   ++E
Sbjct: 1007 GCRQRNLDLYRQEKEE 1022


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,304
Number of Sequences: 438
Number of extensions: 1561
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5012760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)