Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a14
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    32   0.087
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    29   0.81 
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    27   2.5  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   5.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   10.0 

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 31.9 bits (69), Expect = 0.087
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -2

Query: 390  RAWYTWXXXXXRP*GFIQSLQWCHGSPIAMLNLEILQYHQGPVSLCLHHHPVWGSDV 220
            R+ YTW             + WCH   I+ +N  +L   Q P+  CL  +     DV
Sbjct: 1318 RSPYTWKSASQVSYNASLLINWCHQKGISYVNSSLLPLMQSPLVFCLRKNDANDLDV 1374


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -1

Query: 295 LRNSTIPSGASVALSPPPPCVGLRRGAL 212
           LRNS  P+ AS  L+PPPP    R G L
Sbjct: 8   LRNSRAPT-ASQLLNPPPPSSSTRSGRL 34


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 327 WCHGSPIAMLNLEILQYHQGPVSLCLHHHPVWGSDVEHF 211
           +C+ + IA+  LE+L+YHQ  + + +  H   G  VE F
Sbjct: 147 FCYVNDIALAALELLKYHQRVLYIDIDVH--HGDGVEEF 183


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
 Frame = -1

Query: 664 RRLNLENGTQDYSGEQKPFIDLLIEIAEEKGLSDMEVIHELATFIAAGHDTV-----PYT 500
           R+  L N   D S E+K  +    E+   K +     I   ++ I   +DT+     P  
Sbjct: 35  RKTQLSNS--DKSSEKKDEVKKQREVKRFKRVGKRGKIGSPSSSIRKQNDTIDWKNSPLC 92

Query: 499 LLYTLMCVGSHPPVQQRIYEELQQVLGSDDVTKQNL 392
           + Y+ +  G+     ++++EEL  +L  DD+   NL
Sbjct: 93  VFYSTLG-GTAERYAKQVHEELSSLLQRDDIQLLNL 127


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 275 WYCRISKFNIAIGDP 319
           WYC   KFNI+  DP
Sbjct: 310 WYCDACKFNISDYDP 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,151
Number of Sequences: 5004
Number of extensions: 53638
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)