Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a13
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    31   0.12 
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    29   0.83 
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   1.9  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   4.4  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.7  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    25   7.7  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 676 FRPERFMPSEYNHNKTKFVYLPFGDGPRGCIGARLGLMQSLA--GLAAVLSKFTVKPAPN 503
           F P+R+ P+       K  ++ FG+GP  C+G R  +   +A  G A+++  +  K  P+
Sbjct: 431 FNPDRWAPNGLAEQSPKN-WMVFGNGPHVCLGQRYAVNHLIACIGKASIMLDWKHKRTPD 489

Query: 502 T 500
           +
Sbjct: 490 S 490


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 619 YLPFGDGPRGCIGARLGLMQSLAGLAAVLSKF 524
           YLPFG G   CIG +   M     L+ ++SKF
Sbjct: 432 YLPFGAGRHRCIGEQFAYMH----LSTIISKF 459


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 454 SSARCWIWVQRPDDALCS 507
           SSARCWI  +  D  LCS
Sbjct: 10  SSARCWICYEEYDKKLCS 27


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -1

Query: 602 WTTWLHRCSPWLNAVLGRLGSRPVQVHGEASSEHKASSG 486
           W + + R S W N  L   G++ ++ HG    + +   G
Sbjct: 41  WNSIVRRSSVWHNLYLSEFGTKHLRRHGRIEKKRRNWKG 79


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 617 LTFWRWTTWLHRCSPWLNAVLG 552
           L+ + W TW+   SP +N + G
Sbjct: 286 LSLFAWVTWIRPNSPTVNQIFG 307


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 546 KPAKDCIKPRRAPMQPR-GPS 605
           KPA D +  R+AP++PR GP+
Sbjct: 42  KPALDALGRRKAPIKPRPGPT 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,139
Number of Sequences: 5004
Number of extensions: 51266
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)