Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a10
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   2.5  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   2.5  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    27   3.3  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    26   5.8  

>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 428 PNT*GGTEPQSLY*SLAPSD*TLTTPTVPRGALLQPNHQNAVERGN*GLSVSTLN 592
           PN  G    QSL  S++P D   T    P+     PN+ N     N  +++  LN
Sbjct: 299 PNPQGNVGAQSLQ-SMSPQDQPSTQQQQPQRTAAPPNNPNVNATNNNRINIEMLN 352


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 669 TPPCSTLTDTPTSSRGDHTGDSTTD-LFSVDTDNPQFPR 556
           TP   T T TP ++  +   + TTD L S + +N Q P+
Sbjct: 592 TPLTPTTTPTPRTAAQEDPAEETTDALASAEGENNQMPQ 630


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -2

Query: 678 ITSTPPCSTLTDTPTSSRGDHTGDSTTDLFS 586
           ITS  P  +   +P SS   +TGDSTTDL S
Sbjct: 58  ITSDTPKVSSQHSPVSSA--YTGDSTTDLDS 86


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 287 CVRSARALCSASKAHIAGATCSLRCCNHP 201
           CV   R L SAS   + G  C    CN P
Sbjct: 154 CVLLGRPLVSASALKLEGQLCIYNYCNGP 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,948
Number of Sequences: 5004
Number of extensions: 44736
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)