Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a10
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    30   1.5  
01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070     30   1.5  
01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285     28   6.0  
01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319     28   6.0  
10_07_0144 - 13367579-13368805,13369540-13369578,13369662-133698...    28   7.9  

>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 594 LFSVDTDNPQFPRSTAFWWLGCSSAPRGTVGVVNVQ 487
           +F   T +PQ  +  AFW   C+   +G +GV+N++
Sbjct: 515 VFGEATTHPQLEKFLAFWDRVCTPKDKGGMGVINLR 550


>01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070
          Length = 622

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 625 GGSYWRFNDRF--VQRGHRQPSVPAFNRVLVV 536
           G S+WRF D +    RG   P  PAF+R  +V
Sbjct: 336 GQSFWRFMDAWSAAARGRPSPPAPAFDRSAIV 367


>01_03_0094 - 12470441-12471015,12471492-12471738,12472467-12473285
          Length = 546

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 296 GTCCVRSARALCSASKAHIAGATCSLRCCNHPPRDLKDDVTD 171
           G  C  SA ALC  +K H  G  C++     PP  L  D  D
Sbjct: 355 GNTCSVSAVALCIEAKFHKYGFRCTI---ERPPHKLLQDCLD 393


>01_03_0091 + 12358475-12359293,12360022-12360268,12360745-12361319
          Length = 546

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -3

Query: 296 GTCCVRSARALCSASKAHIAGATCSLRCCNHPPRDLKDDVTD 171
           G  C  SA ALC  +K H  G  C++     PP  L  D  D
Sbjct: 355 GNTCSVSAVALCIEAKFHKYGFRCTI---ERPPHKLLQDCLD 393


>10_07_0144 -
           13367579-13368805,13369540-13369578,13369662-13369826,
           13370083-13370193
          Length = 513

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 413 PPPRHHSHASMTARLVW 363
           PPP HH H++M    +W
Sbjct: 329 PPPHHHHHSAMNGGGIW 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,411,288
Number of Sequences: 37544
Number of extensions: 352089
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)