Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a10
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      29   3.1  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF125448-7|AAD12812.2|  302|Caenorhabditis elegans Cyclin c prot...    28   7.1  
Z81146-10|CAB54274.2|  796|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z81146-9|CAB03528.1|  817|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81121-2|CAB54308.2|  796|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81121-1|CAB03351.1|  817|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z70308-14|CAB54254.2|  796|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z70308-13|CAA94353.1|  817|Caenorhabditis elegans Hypothetical p...    27   9.4  
AY090019-1|AAM09088.1|  796|Caenorhabditis elegans minibrain kin...    27   9.4  

>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +1

Query: 292 VPQRGHDHDQHAG*CWPRDYTVVLQTRRAVIDACE--WCRGGG 414
           +P +    DQ     W RDY V +   +A+ D C   WC   G
Sbjct: 465 LPGQRFTADQQCSYFWGRDYKVEIPNGKAMDDICRILWCGNSG 507


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical
           protein C02B4.1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +1

Query: 292 VPQRGHDHDQHAG*CWPRDYTVVLQTRRAVIDACE--WCRGGG 414
           +P +    DQ     W RDY V +   +A+ D C   WC   G
Sbjct: 465 LPGQRFTADQQCSYFWGRDYKVEIPNGKAMDDICRILWCGNSG 507


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +1

Query: 292 VPQRGHDHDQHAG*CWPRDYTVVLQTRRAVIDACE--WCRGGG 414
           +P +    DQ     W RDY V +   +A+ D C   WC   G
Sbjct: 465 LPGQRFTADQQCSYFWGRDYKVEIPNGKAMDDICRILWCGNSG 507


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 257 ASKAHIAGATCSLRC--CNHPPRDLKDDVTDCERVLSAC 147
           A K  +A   C   C  CN PP D+   ++DC+  L  C
Sbjct: 338 ACKLSVASEYCPRTCEYCN-PPSDMAKTMSDCKDELETC 375


>AF125448-7|AAD12812.2|  302|Caenorhabditis elegans Cyclin c protein
           1 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 209 NHPPRDLKDDVTDCERVLSACLRCSIFLVY 120
           N P +DL+     C++V +  LRC + L++
Sbjct: 185 NQPIKDLEAIEAQCQKVANDSLRCDVSLIF 214


>Z81146-10|CAB54274.2|  796|Caenorhabditis elegans Hypothetical
           protein F49E11.1c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 570 PQFPRSTAFWWLGCSSAPRGTVGVVNVQSDGARL*YNDCGSVPPHVLGGLKTTSAATPFT 391
           PQ P+S +F     ++AP    G  +  S+     Y+   S+PP++LG  + ++++    
Sbjct: 58  PQIPQSASF-----AAAPTSFSGASSSSSNHHHPVYHSQNSLPPNLLGSSQNSASSNSLV 112

Query: 390 RIYDGTPSLENDGVIAR 340
           + +   P+L +   + R
Sbjct: 113 QGH-RNPALGSGNTLTR 128


>Z81146-9|CAB03528.1|  817|Caenorhabditis elegans Hypothetical
           protein F49E11.1b protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 570 PQFPRSTAFWWLGCSSAPRGTVGVVNVQSDGARL*YNDCGSVPPHVLGGLKTTSAATPFT 391
           PQ P+S +F     ++AP    G  +  S+     Y+   S+PP++LG  + ++++    
Sbjct: 58  PQIPQSASF-----AAAPTSFSGASSSSSNHHHPVYHSQNSLPPNLLGSSQNSASSNSLV 112

Query: 390 RIYDGTPSLENDGVIAR 340
           + +   P+L +   + R
Sbjct: 113 QGH-RNPALGSGNTLTR 128


>Z81121-2|CAB54308.2|  796|Caenorhabditis elegans Hypothetical
           protein F49E11.1c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 570 PQFPRSTAFWWLGCSSAPRGTVGVVNVQSDGARL*YNDCGSVPPHVLGGLKTTSAATPFT 391
           PQ P+S +F     ++AP    G  +  S+     Y+   S+PP++LG  + ++++    
Sbjct: 58  PQIPQSASF-----AAAPTSFSGASSSSSNHHHPVYHSQNSLPPNLLGSSQNSASSNSLV 112

Query: 390 RIYDGTPSLENDGVIAR 340
           + +   P+L +   + R
Sbjct: 113 QGH-RNPALGSGNTLTR 128


>Z81121-1|CAB03351.1|  817|Caenorhabditis elegans Hypothetical
           protein F49E11.1b protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 570 PQFPRSTAFWWLGCSSAPRGTVGVVNVQSDGARL*YNDCGSVPPHVLGGLKTTSAATPFT 391
           PQ P+S +F     ++AP    G  +  S+     Y+   S+PP++LG  + ++++    
Sbjct: 58  PQIPQSASF-----AAAPTSFSGASSSSSNHHHPVYHSQNSLPPNLLGSSQNSASSNSLV 112

Query: 390 RIYDGTPSLENDGVIAR 340
           + +   P+L +   + R
Sbjct: 113 QGH-RNPALGSGNTLTR 128


>Z70308-14|CAB54254.2|  796|Caenorhabditis elegans Hypothetical
           protein F49E11.1c protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 570 PQFPRSTAFWWLGCSSAPRGTVGVVNVQSDGARL*YNDCGSVPPHVLGGLKTTSAATPFT 391
           PQ P+S +F     ++AP    G  +  S+     Y+   S+PP++LG  + ++++    
Sbjct: 58  PQIPQSASF-----AAAPTSFSGASSSSSNHHHPVYHSQNSLPPNLLGSSQNSASSNSLV 112

Query: 390 RIYDGTPSLENDGVIAR 340
           + +   P+L +   + R
Sbjct: 113 QGH-RNPALGSGNTLTR 128


>Z70308-13|CAA94353.1|  817|Caenorhabditis elegans Hypothetical
           protein F49E11.1b protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 570 PQFPRSTAFWWLGCSSAPRGTVGVVNVQSDGARL*YNDCGSVPPHVLGGLKTTSAATPFT 391
           PQ P+S +F     ++AP    G  +  S+     Y+   S+PP++LG  + ++++    
Sbjct: 58  PQIPQSASF-----AAAPTSFSGASSSSSNHHHPVYHSQNSLPPNLLGSSQNSASSNSLV 112

Query: 390 RIYDGTPSLENDGVIAR 340
           + +   P+L +   + R
Sbjct: 113 QGH-RNPALGSGNTLTR 128


>AY090019-1|AAM09088.1|  796|Caenorhabditis elegans minibrain kinase
           2 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -2

Query: 570 PQFPRSTAFWWLGCSSAPRGTVGVVNVQSDGARL*YNDCGSVPPHVLGGLKTTSAATPFT 391
           PQ P+S +F     ++AP    G  +  S+     Y+   S+PP++LG  + ++++    
Sbjct: 58  PQIPQSASF-----AAAPTSFSGASSSSSNHHHPVYHSQNSLPPNLLGSSQNSASSNSLV 112

Query: 390 RIYDGTPSLENDGVIAR 340
           + +   P+L +   + R
Sbjct: 113 QGH-RNPALGSGNTLTR 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,133,471
Number of Sequences: 27780
Number of extensions: 278080
Number of successful extensions: 749
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)