Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a10
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   6.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 681 LITSTPPCSTLTDTPTSSRGDHTGDSTTDL 592
           ++   P  +T+     +  G+H GD+ TD+
Sbjct: 113 ILEKKPDVTTVELVDATDPGEHNGDTVTDV 142


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 506 SEWSTFSRTEPDFNI 462
           SEW ++SR EP + I
Sbjct: 543 SEWPSYSRDEPKYFI 557


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 35  FKYKNYDFIKLHCSHRVKKYI-IHHSETLDI 124
           + Y N ++ KL+C++  K Y  I++ E + I
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQIPI 119


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 35  FKYKNYDFIKLHCSHRVKKYI-IHHSETLDI 124
           + Y N ++ KL+C++  K Y  I++ E + I
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQIPI 119


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 35  FKYKNYDFIKLHC-SHRVKKYIIHHSETLDI 124
           + Y N ++ KL+C ++R   Y I++ E + I
Sbjct: 89  YNYNNNNYKKLYCNNYRKLYYNINYIEQIPI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,897
Number of Sequences: 438
Number of extensions: 3400
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)