Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a06
(676 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-3757|AAG22453.3| 237|Drosophila melanogaster CG17521-P... 411 e-115
AE014296-3758|AAF45440.2| 231|Drosophila melanogaster CG17521-P... 411 e-115
U49721-1|AAC16108.1| 218|Drosophila melanogaster QM homolog pro... 410 e-114
AY070910-1|AAL48532.1| 218|Drosophila melanogaster RE02339p pro... 410 e-114
BT003580-1|AAO39584.1| 197|Drosophila melanogaster LD24589p pro... 199 2e-51
AE013599-129|AAF57296.3| 499|Drosophila melanogaster CG14471-PA... 33 0.36
AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB... 33 0.36
BT011380-1|AAR96172.1| 1233|Drosophila melanogaster LP07472p pro... 31 1.9
AY047535-1|AAK77267.1| 640|Drosophila melanogaster GH04440p pro... 31 1.9
AE013599-782|AAF58990.2| 1233|Drosophila melanogaster CG8777-PA ... 31 1.9
AE014296-3425|AAF51645.2| 926|Drosophila melanogaster CG3680-PA... 29 7.7
>AE014296-3757|AAG22453.3| 237|Drosophila melanogaster CG17521-PB,
isoform B protein.
Length = 237
Score = 411 bits (1012), Expect = e-115
Identities = 187/211 (88%), Positives = 199/211 (94%), Gaps = 1/211 (0%)
Frame = -2
Query: 663 WCHFVK-ITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVH 487
W V + MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVH
Sbjct: 11 WKRLVSGVEMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVH 70
Query: 486 LVSDEYEQLSSKALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRL 307
LVSDEYEQLSS+ALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRL
Sbjct: 71 LVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRL 130
Query: 306 QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 127
QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKW
Sbjct: 131 QTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKW 190
Query: 126 GFTKYERDEFEKLREEGRLANDGCIVQYRPE 34
GFTKYER+ +E+LR++ RL DGC V+YRPE
Sbjct: 191 GFTKYERERYEELRDDNRLEPDGCNVKYRPE 221
>AE014296-3758|AAF45440.2| 231|Drosophila melanogaster CG17521-PA,
isoform A protein.
Length = 231
Score = 411 bits (1011), Expect = e-115
Identities = 185/204 (90%), Positives = 197/204 (96%)
Frame = -2
Query: 645 ITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYE 466
+ MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHLVSDEYE
Sbjct: 12 VEMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYE 71
Query: 465 QLSSKALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 286
QLSS+ALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA
Sbjct: 72 QLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 131
Query: 285 FGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER 106
FGKPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER
Sbjct: 132 FGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER 191
Query: 105 DEFEKLREEGRLANDGCIVQYRPE 34
+ +E+LR++ RL DGC V+YRPE
Sbjct: 192 ERYEELRDDNRLEPDGCNVKYRPE 215
>U49721-1|AAC16108.1| 218|Drosophila melanogaster QM homolog
protein.
Length = 218
Score = 410 bits (1009), Expect = e-114
Identities = 185/202 (91%), Positives = 196/202 (97%)
Frame = -2
Query: 639 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 460
MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHLVSDEYEQL
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQL 60
Query: 459 SSKALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 280
SS+ALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 279 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 100
KPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERER 180
Query: 99 FEKLREEGRLANDGCIVQYRPE 34
+E+LR++ RL DGC V+YRPE
Sbjct: 181 YEELRDDNRLEPDGCNVKYRPE 202
>AY070910-1|AAL48532.1| 218|Drosophila melanogaster RE02339p
protein.
Length = 218
Score = 410 bits (1009), Expect = e-114
Identities = 185/202 (91%), Positives = 196/202 (97%)
Frame = -2
Query: 639 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 460
MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHLVSDEYEQL
Sbjct: 1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQL 60
Query: 459 SSKALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 280
SS+ALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120
Query: 279 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 100
KPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERER 180
Query: 99 FEKLREEGRLANDGCIVQYRPE 34
+E+LR++ RL DGC V+YRPE
Sbjct: 181 YEELRDDNRLEPDGCNVKYRPE 202
>BT003580-1|AAO39584.1| 197|Drosophila melanogaster LD24589p
protein.
Length = 197
Score = 199 bits (486), Expect = 2e-51
Identities = 118/206 (57%), Positives = 135/206 (65%), Gaps = 2/206 (0%)
Frame = -2
Query: 645 ITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYE 466
+ MGRRPARCYRY C+ P PK R F G + F L
Sbjct: 5 VEMGRRPARCYRY-----------CKNKPYPKSR-FCRGVPDPKIRIFDL---------- 42
Query: 465 QLSSKALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI--NKMLSCAGADRLQTGMR 292
+E +C +LV D++ ++ RI NKMLSCAGADRLQTGMR
Sbjct: 43 GRKKATVEDFPLCV--HLVS----DEYE-QLSSEALEAGRICCNKMLSCAGADRLQTGMR 95
Query: 291 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 112
GAFGKPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY
Sbjct: 96 GAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 155
Query: 111 ERDEFEKLREEGRLANDGCIVQYRPE 34
ER+ +E+LR++ RL DGC V+YRPE
Sbjct: 156 ERERYEELRDDNRLEPDGCNVKYRPE 181
>AE013599-129|AAF57296.3| 499|Drosophila melanogaster CG14471-PA,
isoform A protein.
Length = 499
Score = 33.1 bits (72), Expect = 0.36
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 230 PCALVTGGRHRSSRLCAVPS-SSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAA 54
P LV GGR SS +PS SS+P+ K + R V SL R+ SL A
Sbjct: 297 PACLVGGGREVSSIPMPIPSPSSNPNSKPTPANRPIVGS--EAFSLLPTTARSTSLTETA 354
Query: 53 LCSTARXHGPLDA 15
L TA PL A
Sbjct: 355 LAKTAATVLPLYA 367
>AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB,
isoform B protein.
Length = 1209
Score = 33.1 bits (72), Expect = 0.36
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 230 PCALVTGGRHRSSRLCAVPS-SSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAA 54
P LV GGR SS +PS SS+P+ K + R V SL R+ SL A
Sbjct: 297 PACLVGGGREVSSIPMPIPSPSSNPNSKPTPANRPIVGS--EAFSLLPTTARSTSLTETA 354
Query: 53 LCSTARXHGPLDA 15
L TA PL A
Sbjct: 355 LAKTAATVLPLYA 367
>BT011380-1|AAR96172.1| 1233|Drosophila melanogaster LP07472p protein.
Length = 1233
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 675 LSRLWCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGV 562
+S L H++ I G R A CY + + +P SR R V
Sbjct: 1106 ISYLTAHYILINEGARRALCYLQTRIRMFPNSRSLRSV 1143
>AY047535-1|AAK77267.1| 640|Drosophila melanogaster GH04440p
protein.
Length = 640
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 675 LSRLWCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGV 562
+S L H++ I G R A CY + + +P SR R V
Sbjct: 513 ISYLTAHYILINEGARRALCYLQTRIRMFPNSRSLRSV 550
>AE013599-782|AAF58990.2| 1233|Drosophila melanogaster CG8777-PA
protein.
Length = 1233
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 675 LSRLWCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGV 562
+S L H++ I G R A CY + + +P SR R V
Sbjct: 1106 ISYLTAHYILINEGARRALCYLQTRIRMFPNSRSLRSV 1143
>AE014296-3425|AAF51645.2| 926|Drosophila melanogaster CG3680-PA
protein.
Length = 926
Score = 28.7 bits (61), Expect = 7.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 441 PPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTS 581
PPK S+ +RTP+ + S+ R SWD V+ R S
Sbjct: 544 PPKKESAQSAAKRTPADSVFTKATANTSARKPRASDSWDYVYKQRAS 590
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,189,449
Number of Sequences: 53049
Number of extensions: 817900
Number of successful extensions: 2507
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2506
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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