Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a04
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 29 1.4
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793 29 1.8
06_01_0997 - 7752634-7753128,7753280-7753708,7754403-7755196,775... 27 4.2
06_01_0982 + 7627420-7628141,7628190-7628643,7629167-7629823,762... 27 4.2
01_04_0082 + 15835137-15836312 27 4.2
08_02_0869 - 22031889-22032017,22032114-22032204,22032289-220323... 27 5.6
05_07_0240 + 28606345-28607316 27 5.6
10_08_0925 + 21604871-21605021,21605562-21605881,21606899-216078... 27 7.3
09_02_0573 - 10804171-10805096,10805188-10805377,10805920-108063... 26 9.7
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 26 9.7
02_05_1046 - 33740809-33741201,33741359-33741511,33741583-337424... 26 9.7
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 56 LYIQVPESSCSFLLNINDPILFQSRHNPMNVK 151
L +QVPE+ C F +NI++PI+++ N+K
Sbjct: 3777 LGVQVPEN-CVFFVNIHEPIIWRLHEMIQNLK 3807
>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
Length = 783
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = -3
Query: 176 LFCGMDSSPSHSWDCVSIG-KELDH---LYLTRRNMTIPVPEYTIILARF 39
L CG++ SH W C H L L R T P P+ T+ A+F
Sbjct: 625 LICGVEEPQSHYWRCYHANFLASTHGTVLKLNREATTTPNPKRTLFFAQF 674
>06_01_0997 -
7752634-7753128,7753280-7753708,7754403-7755196,
7755247-7755574
Length = 681
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 68 VPESSCSFLLNINDPILFQSRHNPMNVKVRNPCHKKVT 181
+P +S + L INDP + Q + P++ + + H K +
Sbjct: 631 IPSASTNPTLQINDPPIIQKQGRPVSTRRKPGVHAKAS 668
>06_01_0982 +
7627420-7628141,7628190-7628643,7629167-7629823,
7629975-7630469
Length = 775
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 68 VPESSCSFLLNINDPILFQSRHNPMNVKVRNPCHKKVT 181
+P +S + L INDP + Q + P++ + + H K +
Sbjct: 725 IPSASTNPTLQINDPPIIQKQGRPVSTRRKPGVHAKAS 762
>01_04_0082 + 15835137-15836312
Length = 391
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 43 LASIIVYSGTGIVMFLLVKYK*SNSFPIETQSHECEGEESMPQKSNCR 186
++ + ++S F+ K++ SN ++ Q H G + Q S+CR
Sbjct: 179 ISKVAIFSSRNSTWFMDDKWEPSNQISVDCQPHVLLGGKLFLQTSSCR 226
>08_02_0869 -
22031889-22032017,22032114-22032204,22032289-22032389,
22033262-22033303,22033393-22033491,22033616-22033753,
22033853-22034428,22034897-22035070,22035155-22035290,
22035694-22035725,22036873-22037125,22037216-22037304,
22037771-22037824,22038801-22038992,22039065-22039229
Length = 756
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 182 QLLFCGMDSSPSHSWDCVSIGKELDHLYLTRRN 84
Q L + SS SH+WD + + LY R N
Sbjct: 159 QALISVVQSSCSHTWDAFQLAQASFRLYCARNN 191
>05_07_0240 + 28606345-28607316
Length = 323
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/65 (18%), Positives = 34/65 (52%)
Frame = +2
Query: 32 DN*IWQVLLYIQVPESSCSFLLNINDPILFQSRHNPMNVKVRNPCHKKVTVGIGSFL*PK 211
D + + +++ + + + +++ +DP FQ H P + VR+ ++++ + + +
Sbjct: 71 DGEVAAAIQHLRAADPALATVIDAHDPPAFQCPHRPFHSLVRSILYQQLAFKAAASVYSR 130
Query: 212 FLKVL 226
FL +L
Sbjct: 131 FLSLL 135
>10_08_0925 +
21604871-21605021,21605562-21605881,21606899-21607897,
21608085-21608126,21608190-21608249,21608915-21608959
Length = 538
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 127 ETQSHECEGEESMPQKSNCRDWLFLMTK 210
ET+ E E + +CRDWLF M K
Sbjct: 479 ETKKLPMEQMEQCVEVVSCRDWLFQMMK 506
>09_02_0573 -
10804171-10805096,10805188-10805377,10805920-10806363,
10806689-10807552,10809269-10809802
Length = 985
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 11 RYNFFTLDN*IWQVLLYIQVPESSCSFLLNINDPILFQSRHNPMNVKVRN 160
+ F+ L + +W +L + S LL DPIL ++ ++ KVRN
Sbjct: 795 KVTFYDLGHVLWDILYIGDIASSRIEILLRELDPIL-ETISGMVHNKVRN 843
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 118 FPIETQSHECEGEESMPQKSNCR-DWLFLMTKIFKS 222
+P +TQ +EC G+E++ + N + +W + F+S
Sbjct: 409 YPQQTQIYECHGDENVSLQQNWQCNWNVVSENDFQS 444
>02_05_1046 -
33740809-33741201,33741359-33741511,33741583-33742461,
33742622-33742630
Length = 477
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 137 DCVSIGKELDHLYLTRRNMTIPVPEYTIILAR 42
DC+SIG+ + H T++ + + E+TII+ +
Sbjct: 107 DCISIGQTVGHAMTTQK---VEMAEFTIIVEK 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,773,025
Number of Sequences: 37544
Number of extensions: 182311
Number of successful extensions: 377
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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