Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a04
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46669-2|AAZ86797.1| 429|Caenorhabditis elegans Hypothetical pr... 30 0.54
U46669-1|AAZ86798.1| 413|Caenorhabditis elegans Hypothetical pr... 30 0.54
U88165-1|AAO12420.1| 656|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical p... 28 2.9
Z70034-8|CAA93857.1| 586|Caenorhabditis elegans Hypothetical pr... 28 2.9
U64608-2|AAB04591.1| 537|Caenorhabditis elegans Hypothetical pr... 27 3.8
AL023856-6|CAC15864.1| 332|Caenorhabditis elegans Hypothetical ... 27 3.8
Z81067-6|CAJ34989.1| 67|Caenorhabditis elegans Hypothetical pr... 26 8.8
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 26 8.8
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 26 8.8
AL132862-33|CAB70222.3| 308|Caenorhabditis elegans Hypothetical... 26 8.8
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 26 8.8
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 26 8.8
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 26 8.8
>U46669-2|AAZ86797.1| 429|Caenorhabditis elegans Hypothetical
protein C41G11.1a protein.
Length = 429
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 109 SNSFPIETQSHECEGEESMPQKSNCRDWLFLMTKIFKS 222
+ S PI H+C G S+ K W+ M FKS
Sbjct: 277 NTSLPILVNLHQCSGTRSVKVKRMLNSWMLNMKATFKS 314
>U46669-1|AAZ86798.1| 413|Caenorhabditis elegans Hypothetical
protein C41G11.1b protein.
Length = 413
Score = 30.3 bits (65), Expect = 0.54
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 109 SNSFPIETQSHECEGEESMPQKSNCRDWLFLMTKIFKS 222
+ S PI H+C G S+ K W+ M FKS
Sbjct: 261 NTSLPILVNLHQCSGTRSVKVKRMLNSWMLNMKATFKS 298
>U88165-1|AAO12420.1| 656|Caenorhabditis elegans Hypothetical
protein F54C1.5a protein.
Length = 656
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 230 LFSCSILDWCHSFMIS*LNLIDCL*QLIANYSLYAKYFPIYLSLRFMAF 376
L + S+L +C+ + +N DC QL N+ Y++Y + + AF
Sbjct: 43 LAALSLLAYCYYYTQDFMNAADCYSQLSYNFPQYSQYKLYHAQSLYNAF 91
>Z81112-6|CAB03277.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 59 YIQVPESSCSFLLNINDPILFQSRHNPMN 145
YI VP FLLN +D IL +P+N
Sbjct: 309 YISVPHIDGEFLLNYSDEILASGTIHPIN 337
>Z77136-10|CAB00887.1| 673|Caenorhabditis elegans Hypothetical
protein ZC376.3 protein.
Length = 673
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 59 YIQVPESSCSFLLNINDPILFQSRHNPMN 145
YI VP FLLN +D IL +P+N
Sbjct: 309 YISVPHIDGEFLLNYSDEILASGTIHPIN 337
>Z70034-8|CAA93857.1| 586|Caenorhabditis elegans Hypothetical
protein C18E9.8 protein.
Length = 586
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 44 WQVLLYIQVPESSCSFLLNI--NDPILFQSRHNPMNVKVRN 160
WQ+L+ +++ S +LN+ D F S P+NV+++N
Sbjct: 103 WQLLVQLRIKTGCQSNILNVVDKDVYKFDSFSYPLNVEIQN 143
>U64608-2|AAB04591.1| 537|Caenorhabditis elegans Hypothetical
protein T22B7.4 protein.
Length = 537
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = -3
Query: 158 SSPSHSWDCVSIGKELDHLYLTRRNMTIPVPEYTI 54
S +H ++C+ + + L + R IP+P +T+
Sbjct: 176 SISNHRYECIDVDDQEKKLLVFTRKQLIPMPRFTV 210
>AL023856-6|CAC15864.1| 332|Caenorhabditis elegans Hypothetical
protein Y94A7B.9 protein.
Length = 332
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 324 VFMQSISLSIYLLGLWRFLLDFA 392
VFM+S+ S++ L LW F LD +
Sbjct: 40 VFMKSVKWSLFNLYLWSFALDIS 62
>Z81067-6|CAJ34989.1| 67|Caenorhabditis elegans Hypothetical
protein F23A7.8 protein.
Length = 67
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 179 LLFCGMDSSPSHSWDCVSIGKELDHLYLTRRNMTIPVPEYTIILARFSCLM 27
+L G+DSS ++ D S G E + +++ + EY++ + CLM
Sbjct: 1 MLQWGVDSSVGYNTDLQSTGHEFKSGLVPSGLLSLEIDEYSLGCHQTQCLM 51
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 19 FFYIRQLNLASIIVYSGTGIVMFLLVKY 102
FF I L L ++ Y+ TG+++F +VKY
Sbjct: 1341 FFIITALFLL-VLFYAYTGVILFPMVKY 1367
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 19 FFYIRQLNLASIIVYSGTGIVMFLLVKY 102
FF I L L ++ Y+ TG+++F +VKY
Sbjct: 1375 FFIITALFLL-VLFYAYTGVILFPMVKY 1401
>AL132862-33|CAB70222.3| 308|Caenorhabditis elegans Hypothetical
protein Y73F8A.3 protein.
Length = 308
Score = 26.2 bits (55), Expect = 8.8
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 224 LMLFSCSILDWCHSFMIS*LNLIDCL*QLIANYSLYAKYFPIYLSLRFMAFPFRF 388
L+L CS+L + ++ ++ I +I N SL KYF IY+ F+ F F +
Sbjct: 91 LLLIRCSMLGGSYGILL--IHFIYRY-LVIHNSSLTKKYFYIYMLGSFITFAFYY 142
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 19 FFYIRQLNLASIIVYSGTGIVMFLLVKY 102
FF I L L ++ Y+ TG+++F +VKY
Sbjct: 1433 FFIITALFLL-VLFYAYTGVILFPMVKY 1459
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 19 FFYIRQLNLASIIVYSGTGIVMFLLVKY 102
FF I L L ++ Y+ TG+++F +VKY
Sbjct: 1486 FFIITALFLL-VLFYAYTGVILFPMVKY 1512
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 19 FFYIRQLNLASIIVYSGTGIVMFLLVKY 102
FF I L L ++ Y+ TG+++F +VKY
Sbjct: 1405 FFIITALFLL-VLFYAYTGVILFPMVKY 1431
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,053,762
Number of Sequences: 27780
Number of extensions: 182908
Number of successful extensions: 506
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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