Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a03
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    66   5e-12
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.6  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   6.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   6.2  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    26   6.2  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
 Frame = -1

Query: 540 YSWSFFHIMFALATLYVMMTLTNWFNPNSQLANE----------NIASMWVKITSSWMCI 391
           Y++ +FHI+F LA  Y    LTNW N  S   N+          + A++WVKI +SW+C 
Sbjct: 364 YNFIWFHIVFVLAAFYTASLLTNW-NTTSVYENQKNDVFVRIGFSYAAVWVKIITSWVCH 422

Query: 390 GLYIWTLVAPAIFPDR 343
           GLY+W+ +AP  FP R
Sbjct: 423 GLYVWSCLAPVFFPYR 438


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = -1

Query: 528 FFHIMFALATLYVMMTLTNWFNPNSQLANENIASMWVKITSSWMCIGLYIWTLVAPAIFP 349
           F  I F+L  L  +       +  + LAN    + + ++  + MC+   +W LV  A F 
Sbjct: 610 FTFIYFSLVPLNNLFHRAYKSSSRTHLANRYFTADYARLQINDMCVSWGLWLLVFGAKFT 669

Query: 348 DREF 337
           +  F
Sbjct: 670 ESYF 673


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 129 NINNMNLPYFISTLVIIVKRPYAFLENIVKKSFY 28
           +I    + YF     I+V R Y F ENIVK + Y
Sbjct: 845 SIGRFTIMYFDGQKFIVVAR-YLFGENIVKAALY 877


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 355 FSGQGIQLNHKSNNVEFDG 299
           +S + +QLNH++ NVE+ G
Sbjct: 304 YSPENLQLNHEAQNVEYLG 322


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 495 YVMMTLTNWFNPNSQLANENIASMWVKITSSWM 397
           ++  T  NWF  N    N  I S+   + S+WM
Sbjct: 53  WLQYTNPNWFKRNFSSGNYEINSLQSLLLSAWM 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,082
Number of Sequences: 5004
Number of extensions: 48161
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)