Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt14a03
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106... 84 1e-16
03_04_0246 - 19324858-19325159,19325239-19325479,19326420-193265... 83 2e-16
01_01_0566 - 4166511-4166632,4167302-4167375,4167509-4167648,416... 47 1e-05
04_04_0443 - 25253425-25253679,25254072-25254131,25254259-252543... 46 3e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 33 0.23
12_01_0276 - 2012205-2012279,2012362-2012566,2012725-2013002 29 3.7
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272... 28 6.5
11_04_0441 + 17781533-17781775,17782007-17782114,17782386-177824... 28 6.5
>02_05_1040 -
33709588-33709880,33709960-33710200,33710498-33710672,
33710781-33710892,33711906-33712145,33712253-33712436
Length = 414
Score = 83.8 bits (198), Expect = 1e-16
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Frame = -1
Query: 711 VCSVLYSSXRTASASSKITMSEHILAKEGSTXXXXXXXXXXXGNEPKVFDNEGDSVAYSW 532
+ SV+YS+ R S+++ ++ + + G+ E K V YS+
Sbjct: 292 ILSVVYSAVRAGSSATVLSAPDS--PRAGADKPLLPFSKADEEAEKKDVPRP---VTYSY 346
Query: 531 SFFHIMFALATLYVMMTLTNW---FNPNSQLANENIASMWVKITSSWMCIGLYIWTLVAP 361
SFFH++F+LA++Y M LT W + +L + S+WV+I + W GLYIW+LVAP
Sbjct: 347 SFFHLIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRIATQWATAGLYIWSLVAP 406
Query: 360 AIFPDREF 337
+FPDREF
Sbjct: 407 LLFPDREF 414
>03_04_0246 -
19324858-19325159,19325239-19325479,19326420-19326594,
19326681-19326748,19327248-19327365,19327979-19328007
Length = 310
Score = 83.4 bits (197), Expect = 2e-16
Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Frame = -1
Query: 711 VCSVLYSSXRTASASSKITMSEHILAKEGSTXXXXXXXXXXXGNEPKVFDNEGDSVAYSW 532
V SV+YS+ R S+++ ++ + + N ++ + V+YS+
Sbjct: 185 VLSVVYSAVRAGSSTTFLSPPSSPRSGIKNPLLGDDNVEAGKSNSKEI---DARPVSYSY 241
Query: 531 SFFHIMFALATLYVMMTLTNWFNP---NSQLANENIASMWVKITSSWMCIGLYIWTLVAP 361
+FFH++FALA++Y M LT W + +S+L + ++WV+I + W LYIWTLVAP
Sbjct: 242 TFFHVIFALASMYSAMLLTGWTSAASDSSELMDVGWTTVWVRICTEWATAALYIWTLVAP 301
Query: 360 AIFPDREFN 334
+FPDR+F+
Sbjct: 302 LLFPDRDFS 310
>01_01_0566 -
4166511-4166632,4167302-4167375,4167509-4167648,
4167731-4167802,4167915-4167984,4168112-4168185,
4168316-4168487,4168887-4168976,4169151-4169175,
4169273-4169432,4169855-4170265,4170443-4170559
Length = 508
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -1
Query: 558 EGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLANENI----ASMWVKITSSWMCI 391
E D + Y + FFH +FA+ +Y M W N N + I AS WV++ + W+
Sbjct: 407 EDDDIPYGFGFFHFVFAMGAMYFAMLFVGW-NANQTMEKWTIDVGWASTWVRVVNEWLAA 465
Query: 390 GLYI 379
+YI
Sbjct: 466 IVYI 469
>04_04_0443 -
25253425-25253679,25254072-25254131,25254259-25254365,
25256594-25256667,25256865-25256998,25257233-25257304,
25257453-25257522,25257602-25257675,25258403-25258574,
25258910-25258934,25259358-25259517,25259730-25259788,
25259908-25260079
Length = 477
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -1
Query: 564 DNEGDSVAYSWSFFHIMFALATLYVMMTLTNW-FNPNSQLANENI--ASMWVKITSSWMC 394
D D V YS+ FHI+FA+ +Y M NW N ++ + ++ S WVKI + W
Sbjct: 274 DQLEDDVPYSYEIFHIVFAMGAMYFAMLFINWELNHPTRKWSIDVGWVSTWVKIINEWFA 333
Query: 393 IGLY 382
+Y
Sbjct: 334 ASIY 337
>11_04_0439 + 17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 262 KWDNNFILYWMTTHQILHCYFYDLIEFPVR 351
+W + L+WM T HCY YD+I+ PV+
Sbjct: 975 RWMEDRDLFWMETRYYSHCY-YDIIQEPVK 1003
>12_01_0276 - 2012205-2012279,2012362-2012566,2012725-2013002
Length = 185
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 570 VFDNEGDSVAYSWSF-FHIMFALATLYVMMTLTNWFNPN-SQLANENIASMWVK 415
+FD++ V YS S + +A ++ V M L NW +PN + + E + + VK
Sbjct: 123 MFDDKVIGVLYSMSTNSQVAYARSSTTVHMALKNWLHPNDAAITTEKMIELVVK 176
>11_05_0007 - 18324969-18325063,18326580-18326745,18327078-18327275,
18327377-18327643,18328070-18328129,18328767-18329033,
18329156-18329359,18329441-18331496,18332517-18333358
Length = 1384
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 490 HDDPHQLVQPEFAAGEREYRINVGQNNLLLDVH 392
HD ++ P GE Y+IN+G + + VH
Sbjct: 1279 HDGLQYILGPWGGGGENNYKINLGPSEFITKVH 1311
>11_04_0441 +
17781533-17781775,17782007-17782114,17782386-17782471,
17782546-17782807,17782921-17783120,17783770-17784012,
17784118-17784394,17784625-17784759,17784880-17784960,
17785311-17785406,17785661-17785756,17785834-17785890,
17785967-17786035,17786154-17786240,17786534-17786635,
17786730-17786819,17786900-17786980,17787573-17787653,
17787761-17787856,17787937-17787993,17788093-17788137,
17788218-17788346
Length = 906
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 262 KWDNNFILYWMTTHQILHCYFYDLIEFPVR 351
+W + L+WM T H Y YD+I+ PV+
Sbjct: 857 RWMEDRDLFWMETRYYRHRY-YDIIQEPVK 885
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,160
Number of Sequences: 37544
Number of extensions: 289904
Number of successful extensions: 730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -