Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a03
         (720 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058257-1|AAL13486.1|  465|Drosophila melanogaster GH01515p pro...   100   2e-21
AF181686-1|AAD54422.1|  465|Drosophila melanogaster membrane pro...   100   2e-21
AE014296-2737|AAF49464.2|  465|Drosophila melanogaster CG4672-PA...   100   2e-21

>AY058257-1|AAL13486.1|  465|Drosophila melanogaster GH01515p
           protein.
          Length = 465

 Score =  100 bits (240), Expect = 2e-21
 Identities = 43/79 (54%), Positives = 58/79 (73%), Gaps = 2/79 (2%)
 Frame = -1

Query: 564 DNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNS--QLANENIASMWVKITSSWMCI 391
           D E + V YSWS FH++F  A+LYVMMTLTNW+ P+S  +L N N ASMWVKI SSW+ +
Sbjct: 387 DTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLGV 446

Query: 390 GLYIWTLVAPAIFPDREFN 334
            +Y W+L AP +  +R+F+
Sbjct: 447 FIYGWSLAAPIVLTNRDFS 465


>AF181686-1|AAD54422.1|  465|Drosophila melanogaster membrane
           protein TMS1d protein.
          Length = 465

 Score =  100 bits (240), Expect = 2e-21
 Identities = 43/79 (54%), Positives = 58/79 (73%), Gaps = 2/79 (2%)
 Frame = -1

Query: 564 DNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNS--QLANENIASMWVKITSSWMCI 391
           D E + V YSWS FH++F  A+LYVMMTLTNW+ P+S  +L N N ASMWVKI SSW+ +
Sbjct: 387 DTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLGV 446

Query: 390 GLYIWTLVAPAIFPDREFN 334
            +Y W+L AP +  +R+F+
Sbjct: 447 FIYGWSLAAPIVLTNRDFS 465


>AE014296-2737|AAF49464.2|  465|Drosophila melanogaster CG4672-PA
           protein.
          Length = 465

 Score =  100 bits (240), Expect = 2e-21
 Identities = 43/79 (54%), Positives = 58/79 (73%), Gaps = 2/79 (2%)
 Frame = -1

Query: 564 DNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNS--QLANENIASMWVKITSSWMCI 391
           D E + V YSWS FH++F  A+LYVMMTLTNW+ P+S  +L N N ASMWVKI SSW+ +
Sbjct: 387 DTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYKPHSEIELFNGNEASMWVKIVSSWLGV 446

Query: 390 GLYIWTLVAPAIFPDREFN 334
            +Y W+L AP +  +R+F+
Sbjct: 447 FIYGWSLAAPIVLTNRDFS 465


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,077,398
Number of Sequences: 53049
Number of extensions: 517331
Number of successful extensions: 1351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3211306956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)