Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a03
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...   130   1e-30
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...   130   1e-30
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...   126   1e-29
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c...    29   2.5  
U70850-4|AAB09125.3|  483|Caenorhabditis elegans Amino acid tran...    29   4.4  

>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score =  130 bits (313), Expect = 1e-30
 Identities = 55/84 (65%), Positives = 70/84 (83%), Gaps = 2/84 (2%)
 Frame = -1

Query: 582 NEPKVFDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLA--NENIASMWVKIT 409
           N  +V+DNE + VAYS+SFFH MFALA+LYVMMTLT+W+ P++ L+  N N+AS+WVKI 
Sbjct: 306 NSKRVYDNEEEGVAYSYSFFHFMFALASLYVMMTLTSWYKPSNDLSHLNSNMASVWVKIV 365

Query: 408 SSWMCIGLYIWTLVAPAIFPDREF 337
           SSW+C+ LY WTLVAP I+PDREF
Sbjct: 366 SSWVCVALYCWTLVAPIIYPDREF 389


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score =  130 bits (313), Expect = 1e-30
 Identities = 55/84 (65%), Positives = 70/84 (83%), Gaps = 2/84 (2%)
 Frame = -1

Query: 582 NEPKVFDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLA--NENIASMWVKIT 409
           N  +V+DNE + VAYS+SFFH MFALA+LYVMMTLT+W+ P++ L+  N N+AS+WVKI 
Sbjct: 376 NSKRVYDNEEEGVAYSYSFFHFMFALASLYVMMTLTSWYKPSNDLSHLNSNMASVWVKIV 435

Query: 408 SSWMCIGLYIWTLVAPAIFPDREF 337
           SSW+C+ LY WTLVAP I+PDREF
Sbjct: 436 SSWVCVALYCWTLVAPIIYPDREF 459


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score =  126 bits (305), Expect = 1e-29
 Identities = 56/81 (69%), Positives = 68/81 (83%), Gaps = 2/81 (2%)
 Frame = -1

Query: 573 KVFDNEGDSVAYSWSFFHIMFALATLYVMMTLTNWFNPNSQLA--NENIASMWVKITSSW 400
           K +DNE + VAYS+SFFH MF LA+LYVMMTLT+W++P+S LA  N N+AS+WVK+ SSW
Sbjct: 362 KAWDNEEEGVAYSYSFFHFMFCLASLYVMMTLTSWYHPDSDLAHLNSNMASVWVKMFSSW 421

Query: 399 MCIGLYIWTLVAPAIFPDREF 337
           +C GLY WTLVAP IFPDREF
Sbjct: 422 ICGGLYAWTLVAPIIFPDREF 442


>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical
           protein C48B4.4c protein.
          Length = 1704

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 514 HYMEEAPRVGDGVSFVVEHLRLV 582
           HYM+EA R+GD V F++ H +LV
Sbjct: 735 HYMDEAERLGDWV-FIMSHGKLV 756


>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical
           protein C48B4.4b protein.
          Length = 1691

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 514 HYMEEAPRVGDGVSFVVEHLRLV 582
           HYM+EA R+GD V F++ H +LV
Sbjct: 722 HYMDEAERLGDWV-FIMSHGKLV 743


>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical
           protein C48B4.4a protein.
          Length = 1689

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 514 HYMEEAPRVGDGVSFVVEHLRLV 582
           HYM+EA R+GD V F++ H +LV
Sbjct: 722 HYMDEAERLGDWV-FIMSHGKLV 743


>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
           cassette transporter protein.
          Length = 1704

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 514 HYMEEAPRVGDGVSFVVEHLRLV 582
           HYM+EA R+GD V F++ H +LV
Sbjct: 735 HYMDEAERLGDWV-FIMSHGKLV 756


>U70850-4|AAB09125.3|  483|Caenorhabditis elegans Amino acid
           transporter protein 8 protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 498 LYVMMTLTNWFNPNSQLANENIASMWVKITSSWMCIGLYIWTLV 367
           L + +TLTN F+ N   A   I SM  KI ++ + IG+  + ++
Sbjct: 141 LLLFLTLTNMFSLNKFAARVQIISMCSKIFATLIIIGIGFFFII 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,160
Number of Sequences: 27780
Number of extensions: 270683
Number of successful extensions: 790
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)