Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a01
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.44 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.58 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   1.8  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   2.3  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    27   2.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   5.4  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   7.1  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    25   7.1  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   7.1  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   9.4  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 362 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 252
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 459 VHKLNRVFGEDKSELNWETIPDDVL 533
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 377 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 261
           K SP+V+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 514 VSQLSSDLSSPKTRLSLCTSATV 446
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 119 RTVEPSGHRMAWGYNGRVIGSPEHYAWGIKAF 24
           +T+ P G    +GY   +   P HY + I  F
Sbjct: 2   KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 286  TWYWESALTGTATIWPSESTASIVS 212
            T Y+ +   G ATI PS  TASI+S
Sbjct: 1217 TLYYTTLGIGIATISPSIGTASIIS 1241


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 321 DLVVLPQSD*LPADSRACLVLAVAVXRSAIVALNIIAQRQSETVA 455
           DLV+L   D +PAD R      + +  S +   N   ++ SE ++
Sbjct: 140 DLVILQIGDRVPADLRIVEATELEIDESNLTGENSPRKKSSEAIS 184


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 458 KRDGLALTLSNDVQGDDGRPAYGD 387
           K++G+  +  ND  G++G  AY D
Sbjct: 364 KKEGITSSNKNDDSGNEGSSAYSD 387


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 168  LVLHLQP*IQQGFDTVEDG 112
            +V HL   I+Q +D +EDG
Sbjct: 1020 IVFHLMQRIKQSYDVIEDG 1038


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 204 LGSETIDAV-DSEGHMVAVPVSADSQYQVLVTFSVQDLEVDLVVLPQSD 347
           LGS+   +  ++EG  ++ P+ A+S  +    F+++   VD+  L Q+D
Sbjct: 366 LGSKNFSSTGEAEGTGLSTPIIAESLKENDEFFAMEKENVDIQYLSQND 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,779
Number of Sequences: 5004
Number of extensions: 36255
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)