Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a01
         (534 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118932-1|AAM50792.1|  344|Drosophila melanogaster LD24340p pro...    34   0.14 
AE014298-2013|AAF48356.2|  344|Drosophila melanogaster CG11674-P...    34   0.14 
BT016043-1|AAV36928.1|  415|Drosophila melanogaster LP20058p pro...    32   0.43 
AE014134-3544|AAF57235.1|  631|Drosophila melanogaster CG11630-P...    32   0.43 

>AY118932-1|AAM50792.1|  344|Drosophila melanogaster LD24340p
           protein.
          Length = 344

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 341 ERLTSS*LSGLSCPCRRRXQVCHRRLEH-HCS---ASKRDRRAC 460
           ERL  + + G +CPC     +CH R +  HCS    S  DRR C
Sbjct: 66  ERLKLTNIIGGACPCPMPNAICHTRWQQCHCSEGHVSSDDRRRC 109


>AE014298-2013|AAF48356.2|  344|Drosophila melanogaster CG11674-PA
           protein.
          Length = 344

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 341 ERLTSS*LSGLSCPCRRRXQVCHRRLEH-HCS---ASKRDRRAC 460
           ERL  + + G +CPC     +CH R +  HCS    S  DRR C
Sbjct: 66  ERLKLTNIIGGACPCPMPNAICHTRWQQCHCSEGHVSSDDRRRC 109


>BT016043-1|AAV36928.1|  415|Drosophila melanogaster LP20058p
           protein.
          Length = 415

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 239 FGVNSVDSFRAQWYLQPAKYDNDVLFYIYNREYSKALTLSRTVEP 105
           FGV +++SF+  +Y      D D   Y+Y+RE+      + T+EP
Sbjct: 103 FGVETLESFKCMYYAMERHTDFDNR-YLYSREFELLTDGNNTIEP 146


>AE014134-3544|AAF57235.1|  631|Drosophila melanogaster CG11630-PA
           protein.
          Length = 631

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 239 FGVNSVDSFRAQWYLQPAKYDNDVLFYIYNREYSKALTLSRTVEP 105
           FGV +++SF+  +Y      D D   Y+Y+RE+      + T+EP
Sbjct: 103 FGVETLESFKCMYYAMERHTDFDNR-YLYSREFELLTDGNNTIEP 146


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,433,586
Number of Sequences: 53049
Number of extensions: 404613
Number of successful extensions: 1149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)