Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt14a01
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z75543-5|CAA99872.2|  270|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    28   4.8  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical p...    27   6.4  
Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical p...    27   6.4  
CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ...    27   6.4  
AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear recep...    27   6.4  
AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical ...    27   6.4  
AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical...    27   6.4  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical...    27   8.5  
AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical...    27   8.5  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    27   8.5  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    27   8.5  

>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 389 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 291
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 389 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 291
           D KD+ +P VS KL+AL  N +V+ K   T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643


>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
           protein C44H9.4 protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -2

Query: 398 AYGDGKDKTSPRVSWKLIALWENNK---VYFKILNTERNQYLVLGVGTNWNGDH 246
           ++G   +   PR  ++ I+ +   +    YF++L+ E N+Y+++    N +G H
Sbjct: 129 SWGPNFNSPKPRQVFRDISTYSYERGIRAYFRVLSAEDNKYILIACHANLHGLH 182


>Z75543-5|CAA99872.2|  270|Caenorhabditis elegans Hypothetical
           protein K01D12.5 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 6   TLYYNLESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQCQSLA 140
           T Y N++++  P  M+G++  S VVS G++ + G N+     ++A
Sbjct: 91  TGYSNIQTVGQPYQMYGSAPGSNVVSGGNSESYGYNQQAPVPTVA 135


>Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical
           protein T04F3.2 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 32  LYPKRNVRDFRLLCRCIPRPCGDPRAQPSSTVSKP 136
           LY K    D  + C C+    G+P+   S+T  KP
Sbjct: 83  LYDKVQCYDVSIYCWCVDELSGEPKLGSSTTRGKP 117


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
           presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 21  LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 128
           L+++   S+  G S   AV   GH  T GLN   QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
           protein F07B7.12 protein.
          Length = 1900

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 21  LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 128
           L+++   S+  G S   AV   GH  T GLN   QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645


>Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC410.1b protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 347 IALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQ 204
           IA+WE + V F  LN    ++ +L   T W   +     N  +  R Q
Sbjct: 280 IAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGREKCRRQ 327


>Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical
           protein ZC410.1a protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 347 IALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQ 204
           IA+WE + V F  LN    ++ +L   T W   +     N  +  R Q
Sbjct: 345 IAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGREKCRRQ 392


>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
           protein C42C1.4a protein.
          Length = 1259

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 272 VGTNWNGDHMAFGVNSVDSFRAQWYLQPAK 183
           V  +W  +HM  G+   DSF A W + P K
Sbjct: 346 VNIHWMSNHMIVGI---DSFGAVWQIDPEK 372


>AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 347 IALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQ 204
           IA+WE + V F  LN    ++ +L   T W   +     N  +  R Q
Sbjct: 345 IAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGREKCRRQ 392


>AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical
           protein Y54G11A.4 protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -2

Query: 257 NGDHMA---FGVNSVDSFRAQWYLQPAKYDNDVLFYIYNREYSKALTL 123
           NG H     F   + D +R  W L    Y +  LF+I + EY  AL +
Sbjct: 227 NGRHKEGKEFMYKTEDDWRQGWMLAAHNYWHTALFHIESAEYEPALEI 274


>AF022985-11|AAB69967.2|  650|Caenorhabditis elegans Hypothetical
           protein T15B7.14 protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 124 SVKALLYSRL*M*NKTSLSYLAG--CRYHWALKLSTLLTPKAIWSPFQLVPTPNTKYWLR 297
           S+    YS+L +  K++L Y+A   C  +W +   T  T K   S F L+  P   ++L+
Sbjct: 76  SLTTFEYSKLGIFRKSTLFYIAVAVCYLYWLIY--TFCTFKFSRSQFDLLIAPYRGFYLK 133

Query: 298 SVFKI 312
           SV  +
Sbjct: 134 SVLML 138


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 532 RTSSGIVSQLSSDLSSPKTRLSLCTSATVS 443
           + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 93  KNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>AL117202-30|CAO82060.1|  449|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17d protein.
          Length = 449

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 453 ALVHKLNRVFGEDKSELNWETIPD 524
           AL+H+    + E K + NWE  PD
Sbjct: 424 ALIHQFKGGYWEAKEQQNWEKCPD 447


>AL117202-29|CAO82059.1|  842|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17c protein.
          Length = 842

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 453 ALVHKLNRVFGEDKSELNWETIPD 524
           AL+H+    + E K + NWE  PD
Sbjct: 817 ALIHQFKGGYWEAKEQQNWEKCPD 840


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 453 ALVHKLNRVFGEDKSELNWETIPD 524
           AL+H+    + E K + NWE  PD
Sbjct: 602 ALIHQFKGGYWEAKEQQNWEKCPD 625


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 453 ALVHKLNRVFGEDKSELNWETIPD 524
           AL+H+    + E K + NWE  PD
Sbjct: 741 ALIHQFKGGYWEAKEQQNWEKCPD 764


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,765,999
Number of Sequences: 27780
Number of extensions: 203435
Number of successful extensions: 529
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)