Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13p20
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.64 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.8  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 168 ENLKYLYKMLVGLNAIKRKLTCKFFVHKINVMNKSTDQISK 290
           EN+  LY  +VG  AI    +    V  +N +    DQ+S+
Sbjct: 270 ENVSILYADIVGFTAISSTYSASELVKILNELFARFDQLSE 310


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -2

Query: 626 DTYIRVDKETRQWQTGKVLLFDDSFEHEVWHN 531
           D +++     R W TG+ +  +D     VW N
Sbjct: 191 DRFLQAANACRFWPTGRGIYHNDDKTFLVWCN 222


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 536 ATPRVRSCHQTRAPCRSATAWSLCPLLYK 622
           A P++ +     A C +   W  CP +YK
Sbjct: 453 APPQLPTEESVDALCNTLHHWHHCPEIYK 481


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 283 FQNTLIQLRGDVSKIYQ 333
           F N++ QLR +VS +Y+
Sbjct: 93  FSNSISQLRKEVSLLYR 109


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 156 LLYQSFCCK*LKTNQIICITGQ 91
           LL +  C    +TN +IC+ GQ
Sbjct: 279 LLVRLACMFDAQTNSMICLNGQ 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,851
Number of Sequences: 438
Number of extensions: 3546
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)