Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13p18
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    81   2e-17
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   1.4  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    25   1.4  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    25   1.4  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    25   1.4  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   2.4  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   2.4  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   2.4  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   3.1  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    24   3.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   3.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    23   5.5  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    23   5.5  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    23   7.2  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    23   7.2  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    23   7.2  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    23   9.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    23   9.6  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    23   9.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    23   9.6  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    23   9.6  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 81.4 bits (192), Expect = 2e-17
 Identities = 35/61 (57%), Positives = 46/61 (75%)
 Frame = -3

Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLARA 42
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S    D KF RNQ+F  +G ++  +Q   +
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQAKAS 60

Query: 41  A 39
           A
Sbjct: 61  A 61


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 248 FKVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRK 144
           +K+D  +  +AK  +  NHN ++ A +  I +PRK
Sbjct: 333 YKLD--ICGLAKRDDRKNHNHSKPATQANILQPRK 365


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 77 GNLKPAKQLARAAERKATPRSKG 9
          G   P KQLA  A RKA P + G
Sbjct: 13 GGKAPRKQLASKAARKAAPATGG 35


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 77 GNLKPAKQLARAAERKATPRSKG 9
          G   P KQLA  A RKA P + G
Sbjct: 13 GGKAPRKQLASKAARKAAPATGG 35


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 77 GNLKPAKQLARAAERKATPRSKG 9
          G   P KQLA  A RKA P + G
Sbjct: 13 GGKAPRKQLASKAARKAAPATGG 35


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 190 TKTAKLTEMVSKSQGRPGTN 131
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 250  DSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQN 107
            D K+ E+ S+   ++I    TK  KLT    K++ R      LAW+Q+
Sbjct: 995  DGKF-EDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAWLQS 1041


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 233 KLIKMAKS-KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 66
           +L+ +A S K H+ +  ++K+++NG KK RK   +S        LR  R     N+K
Sbjct: 169 RLLDLALSEKTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRMLDGENVK 224


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 203 HTNHNQNRKAHRNGIKKPRKTRHES 129
           HTN  +NR+  + G  K R  R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 213 LCHFDEFSIHFESED 257
           +CHF+E SI  ES++
Sbjct: 1   MCHFNELSIEIESKN 15


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 86  KTFDSLKILDPCQGWIRAWSSLAF*YHFC 172
           K   SL +LD     + AW+SL   Y+ C
Sbjct: 518 KDLQSLNVLDISLKGVNAWNSLETSYYNC 546


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = -1

Query: 217 QSQRIIQIITKTAKLTEM--VSKSQGRPGTNPPLAWIQ-NF*GIKGFARRVT*SQPSNSR 47
           Q++ II  ++ +A L+E+  +S+S    G+     +I  N   I+ F+  +T   P NS+
Sbjct: 797 QAESIISSLSSSA-LSELSYISESSMNIGSRLDERFIDANGVAIRDFSAELTYLTPENSK 855

Query: 46  GRL 38
           G+L
Sbjct: 856 GKL 858



 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 6    LAFASRGSFSLSRPRELLGWL 68
            LAF   G  S+S P  + GWL
Sbjct: 1013 LAFLFTGISSMSLPYHIRGWL 1033


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 32  FSQPPSRVAWLASGY 76
           FSQPP R A   SGY
Sbjct: 138 FSQPPFRFALFFSGY 152


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 167 NGIKKPRKTRHESTLGM 117
           NGIK+  KTRH S + +
Sbjct: 38  NGIKRGLKTRHVSMMAL 54


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 206 NHTNHNQNRKAHRNGIKKPRKTRHESTLGM 117
           +H NH+++RK +   +    +T H   L +
Sbjct: 850 DHINHSKDRKLNTLALSSLLRTNHPDVLAV 879


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 233 KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 132
           +L +  +S   TN +Q  + H N      KT H+
Sbjct: 138 QLTQQQQSLPQTNEHQRARTHSNANNHFTKTHHQ 171


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 259 LSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKS 152
           L S +   ENS+K +     Q+   T   TEMVS +
Sbjct: 135 LESRNNRDENSAKREKNNSHQVEADTNNATEMVSSN 170


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 95   DSLKILDPCQGWIRAWSSLAF*YH 166
            +S K+     GWI +W  LA   H
Sbjct: 1199 ESAKLAFSLHGWINSWYLLALVMH 1222


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 268 ASVLSSDSKWIENSSKWQS 212
           A+ + S   W+ NS+ WQ+
Sbjct: 67  ATTMYSSMNWLANSTYWQT 85


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 262  VLSSDSKWIENSSKWQSQRIIQ 197
            +  + S+W   S +W+S R IQ
Sbjct: 1463 IFCTPSQWDSLSKRWRSMRSIQ 1484


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 144 LPWLFDTISVSFAVLVMICMIL*LCHFDEFSIHFESE 254
           +PWL  TI     + +M   ++  C+F  F +  E++
Sbjct: 257 IPWLSFTIYRGIGISLMRSALINSCNFTLFELFRETK 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,131,989
Number of Sequences: 5004
Number of extensions: 20377
Number of successful extensions: 68
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)