Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13p18
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0115 - 11248021-11248101,11249017-11249118 84 1e-17
05_03_0661 - 16726958-16726966,16727133-16727234 57 2e-09
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 31 0.13
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 28 0.89
06_03_0336 + 19671500-19672150,19672681-19673301 27 1.6
04_01_0588 + 7657510-7657992,7658397-7658843 27 2.1
08_02_0588 + 19036509-19039235 27 2.7
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560... 27 2.7
10_08_0419 - 17783202-17784938 26 4.8
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 26 4.8
04_01_0403 + 5283830-5284106,5284996-5285179,5285801-5286015,528... 26 4.8
01_06_0937 + 33175966-33178020 26 4.8
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 26 4.8
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 25 6.3
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 25 6.3
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 25 6.3
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796... 25 8.3
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 25 8.3
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 25 8.3
03_01_0651 - 4767836-4767856,4768111-4768457,4768582-4768751,476... 25 8.3
02_05_0432 + 28936293-28936796,28937382-28939250 25 8.3
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 84.2 bits (199), Expect = 1e-17
Identities = 37/52 (71%), Positives = 43/52 (82%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 66
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST GMDPKFLRNQR+ +K N K
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 56.8 bits (131), Expect = 2e-09
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST G +
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 31.1 bits (67), Expect = 0.13
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -3
Query: 212 SKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLARAAER 33
+K NH + GI PR + LG P R + F + +L+ +LAR A
Sbjct: 41 TKEKYNHKVCKPRVCPGISSPRWPMNCPALGRQPAHYRGRVFVRSFDLESTSKLARTASL 100
Query: 32 KATP 21
A+P
Sbjct: 101 FASP 104
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 158 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 75
+KP K R L + +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -2
Query: 123 WHGSKIFKESKVLQEG*PEASQATREGG 40
WH FK S+ G PEA+ A EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 268 ASVLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*G 98
+ VL S S+W +SS+W I + + T + +M Q RP L W ++ G
Sbjct: 214 SGVLPSSSEWRSSSSRWDLGEITRRM-DTLDM-QMGGGQQRRPPAEDGLGWASSWFG 268
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 51 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 143
ELLGW QV A ++P + + A F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453
>02_05_0773 +
31654985-31655365,31655486-31655610,31655712-31656026,
31656145-31656314,31656408-31656751
Length = 444
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 182 RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFC 84
++AHRNG+K T H++ G+ P+ + + + C
Sbjct: 121 QRAHRNGVKVLALTDHDTMAGV-PEAIESAKQC 152
>10_08_0419 - 17783202-17784938
Length = 578
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -3
Query: 161 IKKPRKTRHE-STLGMDPKFLRN----QRFCKKGNLKPAKQLARAAER 33
++K K E S +G++P L Q FC KGN+K A ++ E+
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEK 502
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = -3
Query: 215 KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLARAAE 36
+ +N T + A R + PR+ + + T DP+ + +L P +Q R
Sbjct: 128 RRRNDTPSPERGGAGRKDLSPPRRRQRQDTPSPDPRDAAGK------DLSPPRQRRR--- 178
Query: 35 RKATPRSKGQE 3
R+ TP KG E
Sbjct: 179 RQDTPSPKGSE 189
>04_01_0403 +
5283830-5284106,5284996-5285179,5285801-5286015,
5286616-5286736,5286862-5286974,5287823-5288055,
5288717-5288832,5288949-5289047,5289512-5289691,
5289816-5289903,5289999-5290208,5290599-5290820
Length = 685
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 15 ASRGSFSLSRPRELLGWLQVTLLA 86
AS F +R E LGW +V LLA
Sbjct: 479 ASANIFEANRAAERLGWARVALLA 502
>01_06_0937 + 33175966-33178020
Length = 684
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 110 KFLRNQRFCKKGNLKPAKQLARAAERKAT 24
K +RN C++G A ++ RAAER T
Sbjct: 83 KLIRN--LCRRGRTSDAARVLRAAERSGT 109
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 89 TFDSLKILDPCQGWIRAWSSLAF*Y-HFCELCGFGYDLYDSL 211
TF L ++ CQGW + ++ L+ Y G+ YD +
Sbjct: 280 TFQGLALIIRCQGWRQLFAGLSLNYVKVVPSVAIGFTTYDMM 321
>05_04_0124 +
18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -1
Query: 262 VLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRP---GTNPPLA 119
+L D W E+ KW++ R + K + +++ GT PPLA
Sbjct: 270 LLVLDDVWNEDEQKWEALRTLLCSCKMGSAVVVTTRNSNVASVMGTVPPLA 320
>05_04_0122 +
18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = -1
Query: 262 VLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRP---GTNPPLA 119
+L D W E+ KW++ R + K + +++ GT PPLA
Sbjct: 270 LLVLDDVWNEDEQKWEALRTLLCSCKMGSAVVVTTRNSNVASVMGTVPPLA 320
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
Frame = +2
Query: 77 PSCKT------FDSLKILDPCQGWI 133
P+C+T F+S+K+L PC+ W+
Sbjct: 1448 PNCRTEKLYSYFESIKLLFPCEQWM 1472
>12_01_1064 -
10978039-10978190,10978731-10978865,10979217-10979605,
10979669-10979892,10980011-10980172,10980256-10980906,
10981583-10981804
Length = 644
Score = 25.0 bits (52), Expect = 8.3
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -3
Query: 218 AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLARAA 39
AK + H N Q+R + +P T+H PKF+ N C L P + A AA
Sbjct: 54 AKKRGHKNQ-QDRAVKHVALVEPPATKHSVFTRCSPKFV-NDACCA---LSPIHRQAFAA 108
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 24 GSFSLSRPRELLGWLQVTLLAKPLIP 101
G F S+P +L WLQ + A P P
Sbjct: 1890 GDFESSKPNKLPHWLQEAVRAPPSKP 1915
>04_04_1218 -
31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 233 KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
KL+ A K H N++Q+++ ++ PRK R D
Sbjct: 585 KLLSSASQK-HQNYSQSKQKKHAQLEPPRKKRRRGATDED 623
>03_01_0651 -
4767836-4767856,4768111-4768457,4768582-4768751,
4768848-4769162,4769758-4769882,4770743-4771036
Length = 423
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 179 KAHRNGIKKPRKTRHESTLGMDPKFLRNQRF 87
+AHRNG+K T H++ G+ RF
Sbjct: 93 RAHRNGVKVLALTDHDTMAGIPEAVSAAHRF 123
>02_05_0432 + 28936293-28936796,28937382-28939250
Length = 790
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 47 SRVAWLASGYPSCKTFDSLKILDPCQGWI 133
SR+AWL P+ K +IL+ + WI
Sbjct: 117 SRIAWLCKELPAYKHSTFTRILNAQRKWI 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,369,394
Number of Sequences: 37544
Number of extensions: 134718
Number of successful extensions: 500
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -