Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13p18
(268 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 89 2e-18
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 89 2e-18
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 89 2e-18
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 89 2e-18
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 89 2e-18
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 89 2e-18
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 89 2e-18
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 89 2e-18
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 89 2e-18
CR533556-1|CAG38587.1| 789|Homo sapiens TAX1BP1 protein. 29 2.7
BC050358-1|AAH50358.1| 789|Homo sapiens Tax1 (human T-cell leuk... 29 2.7
AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein. 29 3.5
BC046098-1|AAH46098.1| 450|Homo sapiens CBF1 interacting corepr... 28 4.7
BC031018-1|AAH31018.1| 426|Homo sapiens CIR protein protein. 28 4.7
AC018470-1|AAY24216.1| 450|Homo sapiens unknown protein. 28 4.7
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II pro... 28 6.2
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot... 28 6.2
U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein. 28 6.2
U03644-1|AAA17853.1| 451|Homo sapiens recepin protein. 28 6.2
BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for IM... 28 6.2
AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta p... 28 6.2
AF098297-1|AAD05243.1| 450|Homo sapiens CBF1 interacting corepr... 28 6.2
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be... 28 6.2
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b... 28 6.2
BC028614-1|AAH28614.1| 963|Homo sapiens Ras interacting protein... 27 8.1
BC021860-1|AAH21860.1| 317|Homo sapiens RASIP1 protein protein. 27 8.1
AY378097-1|AAR24580.1| 962|Homo sapiens Ras-interacting protein... 27 8.1
AK000408-1|BAA91145.1| 317|Homo sapiens protein ( Homo sapiens ... 27 8.1
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 51
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 51
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 51
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 51
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 51
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 51
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 51
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 51
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 89.0 bits (211), Expect = 2e-18
Identities = 40/57 (70%), Positives = 45/57 (78%)
Frame = -3
Query: 221 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 51
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G+DPKFLRN RF KK N K K++
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 72
>CR533556-1|CAG38587.1| 789|Homo sapiens TAX1BP1 protein.
Length = 789
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 90 VLQEG*PEASQATREGG*EKSYPEK-QRP 7
VLQ G P ASQ TR+G YP++ QRP
Sbjct: 632 VLQYGNPYASQETRDGADGAFYPDEIQRP 660
>BC050358-1|AAH50358.1| 789|Homo sapiens Tax1 (human T-cell
leukemia virus type I) binding protein 1 protein.
Length = 789
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 90 VLQEG*PEASQATREGG*EKSYPEK-QRP 7
VLQ G P ASQ TR+G YP++ QRP
Sbjct: 632 VLQYGNPYASQETRDGADGAFYPDEIQRP 660
>AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein.
Length = 1721
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 233 KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTL 123
+L ++ + +H +R R G +PRK +H S+L
Sbjct: 715 ELARLQRKHDHERDESSRSPARRGPGRPRKRKHSSSL 751
>BC046098-1|AAH46098.1| 450|Homo sapiens CBF1 interacting
corepressor protein.
Length = 450
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 215 KSKNHTNHNQNRKAHRNGIK---KPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLAR 45
KSK H + +H N K KPR +HES+ D K+ + K K + +
Sbjct: 312 KSKKRKLHEELSSSHHNREKAKEKPRFLKHESS-REDSKWSHSDSDKKSRTHKHSPEKRG 370
Query: 44 AAERKATPRSKGQE 3
+ ++ + RS G+E
Sbjct: 371 SERKEGSSRSHGRE 384
>BC031018-1|AAH31018.1| 426|Homo sapiens CIR protein protein.
Length = 426
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 215 KSKNHTNHNQNRKAHRNGIK---KPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLAR 45
KSK H + +H N K KPR +HES+ D K+ + K K + +
Sbjct: 312 KSKKRKLHEELSSSHHNREKAKEKPRFLKHESS-REDSKWSHSDSDKKSRTHKHSPEKRG 370
Query: 44 AAERKATPRSKGQE 3
+ ++ + RS G+E
Sbjct: 371 SERKEGSSRSHGRE 384
>AC018470-1|AAY24216.1| 450|Homo sapiens unknown protein.
Length = 450
Score = 28.3 bits (60), Expect = 4.7
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 215 KSKNHTNHNQNRKAHRNGIK---KPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLAR 45
KSK H + +H N K KPR +HES+ D K+ + K K + +
Sbjct: 312 KSKKRKLHEELSSSHHNREKAKEKPRFLKHESS-REDSKWSHSDSDKKSRTHKHSPEKRG 370
Query: 44 AAERKATPRSKGQE 3
+ ++ + RS G+E
Sbjct: 371 SERKEGSSRSHGRE 384
>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II protein.
Length = 1031
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 224 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
K + S+N ++N RK + KKP+KT + +D
Sbjct: 953 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 989
>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
Length = 1621
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 224 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
K + S+N ++N RK + KKP+KT + +D
Sbjct: 1543 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1579
>U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein.
Length = 350
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 224 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
K + S+N ++N RK + KKP+KT + +D
Sbjct: 272 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 308
>U03644-1|AAA17853.1| 451|Homo sapiens recepin protein.
Length = 451
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -3
Query: 215 KSKNHTNHNQNRKAHRNGIK---KPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLAR 45
KSK H + H N K KPR +HES+ D K+ + K K + +
Sbjct: 313 KSKKRKLHEELSSTHHNREKAKEKPRFLKHESS-REDSKWSHSDSDKKSRTHKHSPEKRG 371
Query: 44 AAERKATPRSKGQE 3
+ ++ + RS G+E
Sbjct: 372 SERKEGSSRSHGRE 385
>BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for
IMAGE:4999541) protein.
Length = 485
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 224 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
K + S+N ++N RK + KKP+KT + +D
Sbjct: 407 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 443
>AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta
protein.
Length = 717
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 224 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
K + S+N ++N RK + KKP+KT + +D
Sbjct: 639 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 675
>AF098297-1|AAD05243.1| 450|Homo sapiens CBF1 interacting
corepressor CIR protein.
Length = 450
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -3
Query: 215 KSKNHTNHNQNRKAHRNGIK---KPRKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQLAR 45
KSK H + H N K KPR +HES+ D K+ + K K + +
Sbjct: 312 KSKKRKLHEELSSTHHNREKAKEKPRFLKHESS-REDSKWSHSDSDKKSRTHKHSPEKRG 370
Query: 44 AAERKATPRSKGQE 3
+ ++ + RS G+E
Sbjct: 371 SERKEGSSRSHGRE 384
>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
protein.
Length = 1598
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 224 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
K + S+N ++N RK + KKP+KT + +D
Sbjct: 1520 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 1556
>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
isozyme variant protein.
Length = 1009
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 224 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 114
K + S+N ++N RK + KKP+KT + +D
Sbjct: 931 KASGSENEGDYNPGRKTSKTTSKKPKKTSFDQDSDVD 967
>BC028614-1|AAH28614.1| 963|Homo sapiens Ras interacting protein 1
protein.
Length = 963
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 226 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 116
+ W S R A+L ++S Q PG PP AW
Sbjct: 849 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 885
>BC021860-1|AAH21860.1| 317|Homo sapiens RASIP1 protein protein.
Length = 317
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 226 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 116
+ W S R A+L ++S Q PG PP AW
Sbjct: 203 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 239
>AY378097-1|AAR24580.1| 962|Homo sapiens Ras-interacting protein
protein.
Length = 962
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 226 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 116
+ W S R A+L ++S Q PG PP AW
Sbjct: 848 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 884
>AK000408-1|BAA91145.1| 317|Homo sapiens protein ( Homo sapiens
cDNA FLJ20401 fis, clone KAT00901. ).
Length = 317
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 226 SKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAW 116
+ W S R A+L ++S Q PG PP AW
Sbjct: 203 ASWSSLRTDHPTLTPAQLHHLLSHYQLGPGRGPPAAW 239
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,551,462
Number of Sequences: 237096
Number of extensions: 800248
Number of successful extensions: 1945
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1945
length of database: 76,859,062
effective HSP length: 66
effective length of database: 61,210,726
effective search space used: 1346635972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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