Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13p17
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z54342-6|CAA91148.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z69384-6|CAA93414.3| 499|Caenorhabditis elegans Hypothetical pr... 29 2.8
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 28 4.9
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 28 4.9
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr... 28 6.5
AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical ... 28 6.5
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 8.6
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 8.6
U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five) in... 27 8.6
AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -1
Query: 408 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 229
+VT T ++P TT S + PP ++T + +T+ V ST IAP+T
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466
Query: 228 SNTT 217
+TT
Sbjct: 467 PSTT 470
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -1
Query: 399 PKTKPARKSPGSLPPCWKTTE--YTSRSCPPKTNST*SSITRKVLVMTVSSTVIA 241
PKT+P P ++P CW+ + PP+ N+T I K + V+A
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNTMPLIEDKCYAKLGDTLVMA 472
>Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical
protein F15A4.8a protein.
Length = 755
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -1
Query: 345 TTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTT 217
TTE S + PP ++T + +T+ V ST IAP+T +TT
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433
>Z54342-6|CAA91148.1| 459|Caenorhabditis elegans Hypothetical
protein C08H9.11 protein.
Length = 459
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 613 VKRXIENGKRNTMDFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQTVKLINKRDHHALKL 440
VK + K+N +D WT+ E +KSY F + R FTE K N+++ + + L
Sbjct: 202 VKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE-LQKRWNRKNEYIISL 260
Query: 439 I 437
I
Sbjct: 261 I 261
>Z69384-6|CAA93414.3| 499|Caenorhabditis elegans Hypothetical
protein T11G6.4 protein.
Length = 499
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 361 TPVL-ENNRVYFKIMSTEDKQYLKLDNTKGS-SDDRIIYGDSTADTFKHH 218
TPVL + R K+ + EDK L D+ S S+D ++ D T KHH
Sbjct: 444 TPVLIKEKRKRHKLKAREDKALLNSDSDSNSDSEDDLLLNDQTTRR-KHH 492
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = -3
Query: 502 VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 347
++ T++ +K++N +R H L L +KI F D D + + W +P LE
Sbjct: 911 IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970
Query: 346 NNRVYFKIMSTEDK 305
V FK+ +K
Sbjct: 971 AGTVLFKVSIFREK 984
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = -3
Query: 502 VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 347
++ T++ +K++N +R H L L +KI F D D + + W +P LE
Sbjct: 911 IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970
Query: 346 NNRVYFKIMSTEDK 305
V FK+ +K
Sbjct: 971 AGTVLFKVSIFREK 984
>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
protein F37D6.1 protein.
Length = 1227
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 272 RTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLLVDQLEG 451
R F +E+ + + G ++ HGGK+PG T C++ L+ D++ G
Sbjct: 273 RVFEGLEMAITSIDGADRTNFIQLIEDHGGKVPG------TMSKTRCSY---LISDKITG 323
Query: 452 VMVPFVYELDSL 487
V E S+
Sbjct: 324 VKYAKAVEWKSM 335
>AL033508-3|CAA22054.1| 315|Caenorhabditis elegans Hypothetical
protein Y106G6G.4 protein.
Length = 315
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 333 TSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTL 208
TS PP TNS+ S++ V+ ++S+ + L + T TL
Sbjct: 223 TSTDPPPTTNSSNSTVESVTSVIPINSSTVPVLNTTLQTSTL 264
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 375 SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTL 208
SP S PP ++ TSRSC P + +I + PLTPS T L
Sbjct: 39 SPVS-PPTANSSSSTSRSCSPVVRA--ETIVAGKWTHISGKVSVRPLTPSETESVL 91
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 375 SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTL 208
SP S PP ++ TSRSC P + +I + PLTPS T L
Sbjct: 39 SPVS-PPTANSSSSTSRSCSPVVRA--ETIVAGKWTHISGKVSVRPLTPSETESVL 91
>U64862-2|AAZ32793.1| 372|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform e protein.
Length = 372
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 375 SPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTL 208
SP S PP ++ TSRSC P + +I + PLTPS T L
Sbjct: 39 SPVS-PPTANSSSSTSRSCSPVVRA--ETIVAGKWTHISGKVSVRPLTPSETESVL 91
>AF047659-5|AAC04429.1| 347|Caenorhabditis elegans Hypothetical
protein K07H8.8 protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 571 FAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 392
FA Q W D K +K+ IQ+ TE+ + N + + ++N N++ SK
Sbjct: 244 FAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVREELSKG 303
Query: 391 KTSKKVS 371
KT S
Sbjct: 304 KTQHSTS 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,418
Number of Sequences: 27780
Number of extensions: 315821
Number of successful extensions: 1173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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