Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13p13
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0116 + 862401-862734,862823-863078,863177-863311,863395-86...    30   2.3  
08_01_0464 - 4092169-4092837,4093215-4093298,4094753-4094875,409...    28   9.4  

>02_01_0116 +
           862401-862734,862823-863078,863177-863311,863395-864721
          Length = 683

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 443 PSHGCAFYKDIHNFFVLIDIYNFPSNVISLLKIYMFKYKMLLNTVMSCGASW 598
           P+ G   YK  H FF    + N     I ++  YM  + + + T++SCG  W
Sbjct: 232 PTFGLEAYK--HGFFFDFTMANVG---IGMMCPYMIVFSVFIGTIISCGVIW 278


>08_01_0464 -
           4092169-4092837,4093215-4093298,4094753-4094875,
           4095001-4095042
          Length = 305

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -2

Query: 685 IAAYIGS-C*NALDLFEILALKCSEAETSVPGSATRHYSIKQHFIFKHIYFQ*TYYIRWK 509
           +AA + S C   + +  +    C   ET  P + T++Y  K  F  +HI F     I W 
Sbjct: 23  LAAQLSSLCEEEVGIGRMQQRLCVWKETVRPVTCTKNYKTKNSFGVQHIKFDRPLIILWD 82

Query: 508 IIDINENKKIMNVFVE 461
               + ++K M+  ++
Sbjct: 83  EQQPSSDQKKMDKLIK 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,703
Number of Sequences: 37544
Number of extensions: 297181
Number of successful extensions: 609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)