Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13p13
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine r...    28   6.4  

>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 36  HTPWIQLSATRLSPTTQCTDRPCQRSAAYRELL 134
           H P  Q S+T L+PTT     P Q    +RELL
Sbjct: 149 HQPQQQRSSTPLAPTTPTPPPPTQAPTNHRELL 181


>Z49207-5|CAA89070.1|  402|Caenorhabditis elegans Hypothetical
          protein R07E3.1a protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 31 HHILRGFNCQQHGCRQQ 81
          HH L G +C +H CR+Q
Sbjct: 21 HHPLAGNHCSEHACREQ 37


>AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein4 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 482 NYECLCRKHTRVTGVYRILYVHLQHCVCRIIQH 384
           ++  L RKH R   VYR++   +  C C II H
Sbjct: 49  HFSILSRKHLRTNSVYRLM---IGICSCDIISH 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,605,785
Number of Sequences: 27780
Number of extensions: 304120
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)