Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13p10
         (221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    26   0.77 
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    23   5.5  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    23   5.5  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    22   9.5  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    22   9.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    22   9.5  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    22   9.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    22   9.5  

>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 97  LPRVASVPSPWKYTIWNKFQFVKKLHSRRR 186
           LPR   +P P   T W +F  +K +  ++R
Sbjct: 78  LPRAKPLPKPKPETKWQRFARIKGIAPKKR 107


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 10  VNAILYLHTKFII 48
           +NA++YLH  FI+
Sbjct: 160 INALVYLHKNFIV 172


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 27  FTHKVYNNDKTNLKEKTAAILFNFTARSFSAFAVEIY 137
           F  K++ +     KEK+A  ++NF  +S      E+Y
Sbjct: 99  FNGKLFYSPPRLFKEKSALWMYNFHGKSLRNQYKELY 135


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 118 PSPWKYTIWNKFQFVKKLHSRRRMFLDFK 204
           P P++   W K  F +KL      F+D K
Sbjct: 505 PLPFQPMDWGKSIFFEKLKKPTETFMDSK 533


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 124 PWKYTIWNKFQ 156
           PW Y+IW   Q
Sbjct: 242 PWSYSIWEAIQ 252


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 84   WLLFFLSNSSCHYY 43
            WLLF L     HY+
Sbjct: 984  WLLFLLRQQDIHYF 997


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -2

Query: 142 KLYISTAKALKLRAVKLNKMAAVFSFKFVLSLL*TLCVNIIL 17
           K +I+   +  + A+ L  +++VF F+  L+ +  L +NI++
Sbjct: 683 KNFITFQLSTSVAALSLIAISSVFGFQNPLNAMQILWINILM 724


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 150  FVPNCIFPRRRH*SYAR*N*TKWL 79
            F+PN +FP      +AR N  ++L
Sbjct: 1059 FIPNGVFPNGTRLEHARFNCARYL 1082


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 912,066
Number of Sequences: 5004
Number of extensions: 15405
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)