Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13p10
         (221 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0856 + 23708234-23708420,23709364-23709567,23709689-237099...    27   2.7  
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886...    26   4.7  
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551           26   4.7  
01_01_0825 + 6424100-6424133,6425395-6425494,6426140-6426264,642...    25   6.2  
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186...    25   8.3  
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    25   8.3  
01_01_0670 - 5131007-5131873                                           25   8.3  

>12_02_0856 +
           23708234-23708420,23709364-23709567,23709689-23709918,
           23710174-23710174,23710268-23710788
          Length = 380

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 15  RNIIFTHKVYNNDKTNLKEKT 77
           RN +F H +YN +  ++K KT
Sbjct: 187 RNYVFRHAIYNYEAVSVKPKT 207


>03_05_1153 +
           30787574-30787608,30787982-30788089,30788651-30788689,
           30789181-30789184,30789496-30789580,30789609-30790321
          Length = 327

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 73  KQQPFCLILPRVASVPSPWKY 135
           KQ+P C   P+V  VP PW Y
Sbjct: 236 KQEP-CPPPPKVVEVPYPWPY 255


>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
          Length = 589

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 67  KKKQQPFCLILPRVASVPSPWKYTIWNKFQFVKKLHSRRRMFLD 198
           K +   F LI        SPW   +   F F+K LH RR +  D
Sbjct: 85  KPRAAMFNLIPEDWGGSASPWIRQLSASFHFLKALHLRRMIVSD 128


>01_01_0825 +
           6424100-6424133,6425395-6425494,6426140-6426264,
           6426348-6426425,6426508-6426656,6427897-6428043,
           6428177-6428302
          Length = 252

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 106 VASVPSPWKYTIWNKFQFVKKLH 174
           V  + SP K ++WN + F+K  H
Sbjct: 172 VVKLESPVKTSVWNHYAFIKFHH 194


>10_08_0015 +
           14116129-14116691,14116810-14117128,14117588-14118664,
           14118754-14119056
          Length = 753

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -1

Query: 62  IRLVIIINFVCKYNIAF 12
           +R+++I+ F+ K+N+AF
Sbjct: 215 LRILVIVKFLAKHNLAF 231


>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 94  ILPRVASVPSPWKYTI 141
           I PR+  VP PW Y++
Sbjct: 168 IFPRLGMVPPPWYYSL 183


>01_01_0670 - 5131007-5131873
          Length = 288

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 80  CCFFFQIRLVIIINFV 33
           CCFF+ + +V+++ FV
Sbjct: 58  CCFFYAVLVVLLLAFV 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,102,975
Number of Sequences: 37544
Number of extensions: 79813
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)