Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13p10
(221 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006627-9|AAK85464.1| 367|Caenorhabditis elegans Hypothetical ... 27 1.8
AF039049-2|AAB94252.2| 297|Caenorhabditis elegans Serpentine re... 27 2.4
U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone... 26 3.1
U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone... 26 3.1
U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone... 26 3.1
AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear recep... 26 3.1
AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear recep... 26 3.1
AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear recep... 26 3.1
AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear recep... 26 3.1
U64842-3|AAB37082.1| 218|Caenorhabditis elegans Hypothetical pr... 26 4.2
U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily ass... 26 4.2
AJ320257-1|CAC44622.1| 877|Caenorhabditis elegans putative telo... 26 4.2
AF400665-1|AAL28024.1| 877|Caenorhabditis elegans CLK-2 protein. 26 4.2
AC006605-5|AAK85444.3| 877|Caenorhabditis elegans Clock (biolog... 26 4.2
Z22179-14|CAI06052.1| 443|Caenorhabditis elegans Hypothetical p... 25 5.5
AF038611-1|AAB92038.2| 136|Caenorhabditis elegans Hypothetical ... 25 5.5
Z92832-2|CAB07371.1| 431|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z70279-6|CAA94244.2| 720|Caenorhabditis elegans Hypothetical pr... 25 7.3
AL023841-4|CAC42359.1| 720|Caenorhabditis elegans Hypothetical ... 25 7.3
AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin monoox... 25 7.3
>AC006627-9|AAK85464.1| 367|Caenorhabditis elegans Hypothetical
protein E01A2.7 protein.
Length = 367
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 48 NDKTNLKEKTAAILFNFTARSFSAFAVEIYNLEQI 152
N +++K K L++ T RS+ A + + NLE +
Sbjct: 72 NSASDVKWKGQIFLYDLTKRSYKAEPIPVLNLEDV 106
>AF039049-2|AAB94252.2| 297|Caenorhabditis elegans Serpentine
receptor, class x protein67 protein.
Length = 297
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 85 FCLILPRVASVPSPWKYTIWNKFQFVKKL 171
FC+ + R +V P KY IW + KK+
Sbjct: 95 FCISINRFCAVLVPLKYDIWFTIKNTKKI 123
>U46670-3|AAP46279.1| 312|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform d protein.
Length = 312
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 86 NGCCFFFQIRLVIIINFVCKYN 21
NGC FF+ +V F+C+YN
Sbjct: 91 NGCKTFFRRTIVSEQTFICQYN 112
>U46670-2|AAC48174.4| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform c protein.
Length = 440
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 86 NGCCFFFQIRLVIIINFVCKYN 21
NGC FF+ +V F+C+YN
Sbjct: 91 NGCKTFFRRTIVSEQTFICQYN 112
>U46670-1|AAP46277.1| 445|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 1, isoform a protein.
Length = 445
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 86 NGCCFFFQIRLVIIINFVCKYN 21
NGC FF+ +V F+C+YN
Sbjct: 91 NGCKTFFRRTIVSEQTFICQYN 112
>AY204166-1|AAO39170.1| 436|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 436
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 86 NGCCFFFQIRLVIIINFVCKYN 21
NGC FF+ +V F+C+YN
Sbjct: 82 NGCKTFFRRTIVSEQTFICQYN 103
>AY204165-1|AAO39169.1| 445|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 445
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 86 NGCCFFFQIRLVIIINFVCKYN 21
NGC FF+ +V F+C+YN
Sbjct: 91 NGCKTFFRRTIVSEQTFICQYN 112
>AY204164-1|AAO39168.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 86 NGCCFFFQIRLVIIINFVCKYN 21
NGC FF+ +V F+C+YN
Sbjct: 91 NGCKTFFRRTIVSEQTFICQYN 112
>AY204163-1|AAO39167.1| 440|Caenorhabditis elegans nuclear receptor
NHR-1 protein.
Length = 440
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 86 NGCCFFFQIRLVIIINFVCKYN 21
NGC FF+ +V F+C+YN
Sbjct: 91 NGCKTFFRRTIVSEQTFICQYN 112
>U64842-3|AAB37082.1| 218|Caenorhabditis elegans Hypothetical
protein F25B4.4 protein.
Length = 218
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 24 IFTHKVYNNDKTNLKEKTAAILFNFTARS 110
IF HK+Y + KT L ++ A +L +F+ S
Sbjct: 127 IFVHKIYTHLKT-LSQENALLLASFSIHS 154
>U12964-4|AAA91219.3| 447|Caenorhabditis elegans Temporarily
assigned gene nameprotein 340 protein.
Length = 447
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 136 YISTAKALKLRAVKLNKMAAVFSFKFVLSLL*TLCVN 26
YIS+ L LR +KL+ A V++ FV S+ LC N
Sbjct: 340 YISSRDFLDLRKIKLDSSADVYTGYFV-SVESNLCPN 375
>AJ320257-1|CAC44622.1| 877|Caenorhabditis elegans putative
telomere binding protein protein.
Length = 877
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 63 LKEKTAAILFNFTARSFSAFAVEI 134
LK KT IL NF R+ FA+++
Sbjct: 303 LKRKTIEILINFVYRTKEQFAIQL 326
>AF400665-1|AAL28024.1| 877|Caenorhabditis elegans CLK-2 protein.
Length = 877
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 63 LKEKTAAILFNFTARSFSAFAVEI 134
LK KT IL NF R+ FA+++
Sbjct: 303 LKRKTIEILINFVYRTKEQFAIQL 326
>AC006605-5|AAK85444.3| 877|Caenorhabditis elegans Clock
(biological timing) abnormalityprotein 2 protein.
Length = 877
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 63 LKEKTAAILFNFTARSFSAFAVEI 134
LK KT IL NF R+ FA+++
Sbjct: 303 LKRKTIEILINFVYRTKEQFAIQL 326
>Z22179-14|CAI06052.1| 443|Caenorhabditis elegans Hypothetical
protein F58A4.14 protein.
Length = 443
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 178 YCVIF*QIEICSKLYISTAKALKLRAVKLNKM 83
+C I++C++LY AKA+ AV L+ M
Sbjct: 351 HCSALHYIKLCTELYPQNAKAVGAMAVILSHM 382
>AF038611-1|AAB92038.2| 136|Caenorhabditis elegans Hypothetical
protein E04A4.3 protein.
Length = 136
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 70 KKQQPFCLILPRVASVPSPWKYTIWNKFQ 156
K+ + L +P+ + P+ YT W+K+Q
Sbjct: 37 KEDKKLTLRVPQACNDKLPFDYTCWSKYQ 65
>Z92832-2|CAB07371.1| 431|Caenorhabditis elegans Hypothetical
protein F31D4.3 protein.
Length = 431
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 85 FCLILPRVASVPSPWKYTIWNKFQFVKKLHSRRRMFL 195
F + L VP+ W+ T K K+ R M+L
Sbjct: 229 FTIFLKEFEKVPATWEMTAEEKLDAAKQAKDRGTMYL 265
>Z70286-4|CAA94291.2| 533|Caenorhabditis elegans Hypothetical
protein K08C7.2 protein.
Length = 533
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 12 ERNIIFTHKVYNNDKTNLKEKTAAILFNFT 101
E++I F HKV + D+ EKT N+T
Sbjct: 103 EKHIKFNHKVNSIDRNEDYEKTGKWKVNYT 132
>Z70279-6|CAA94244.2| 720|Caenorhabditis elegans Hypothetical
protein K11E8.1c protein.
Length = 720
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 165 FNKLKFVPNCIFPRRRH*SYAR*N*TKWLLFF 70
FN KF NC+ P H Y+ +K LFF
Sbjct: 357 FNPQKFPRNCVHPFTTHPYYSPKESSKKKLFF 388
>AL023841-4|CAC42359.1| 720|Caenorhabditis elegans Hypothetical
protein K11E8.1c protein.
Length = 720
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 165 FNKLKFVPNCIFPRRRH*SYAR*N*TKWLLFF 70
FN KF NC+ P H Y+ +K LFF
Sbjct: 357 FNPQKFPRNCVHPFTTHPYYSPKESSKKKLFF 388
>AJ582070-1|CAE46540.1| 533|Caenorhabditis elegans flavin
monooxygenase protein.
Length = 533
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 12 ERNIIFTHKVYNNDKTNLKEKTAAILFNFT 101
E++I F HKV + D+ EKT N+T
Sbjct: 103 EKHIKFNHKVNSIDRNEDYEKTGKWKVNYT 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,978,849
Number of Sequences: 27780
Number of extensions: 86695
Number of successful extensions: 243
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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