Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13p10
(221 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 23 0.59
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 23 0.59
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 2.4
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 20 3.1
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 20 3.1
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 20 3.1
DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein p... 20 4.1
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 4.1
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 19 5.5
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 19 5.5
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 19 7.2
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 19 9.5
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 19 9.5
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 19 9.5
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 19 9.5
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 19 9.5
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 19 9.5
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 0.59
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 42 YNNDKTNLKEKTAAILFNFTARSFSAFAVEIY 137
Y N KTN E + + R FS + ++IY
Sbjct: 218 YCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 22.6 bits (46), Expect = 0.59
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 42 YNNDKTNLKEKTAAILFNFTARSFSAFAVEIY 137
Y N KTN E + + R FS + ++IY
Sbjct: 218 YCNSKTNTGEYSCLKVDLLFKREFSYYLIQIY 249
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 20.6 bits (41), Expect = 2.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -1
Query: 122 EGTEATRGKIKQNGCCFF 69
+GT T +K NG C +
Sbjct: 121 DGTYPTNVVVKNNGTCLY 138
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 20.2 bits (40), Expect = 3.1
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 97 LPRVASVPSPWKYTIWNKFQ 156
L ++S+P + + I+N+FQ
Sbjct: 171 LDLISSIPLDYIFLIFNQFQ 190
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 20.2 bits (40), Expect = 3.1
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 97 LPRVASVPSPWKYTIWNKFQ 156
L ++S+P + + I+N+FQ
Sbjct: 171 LDLISSIPLDYIFLIFNQFQ 190
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 20.2 bits (40), Expect = 3.1
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 97 LPRVASVPSPWKYTIWNKFQ 156
L ++S+P + + I+N+FQ
Sbjct: 171 LDLISSIPLDYIFLIFNQFQ 190
>DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein
protein.
Length = 430
Score = 19.8 bits (39), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 146 FQIVYFHGEGTEATRGKIKQNGCCFF 69
FQI+ GE T + +NG FF
Sbjct: 305 FQILPERGELGHCTASVMDENGLQFF 330
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 19.8 bits (39), Expect = 4.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +1
Query: 136 TIWNKFQFVKKLHSRRR 186
T W++F+F LH R
Sbjct: 1138 TEWSRFEFRAALHEALR 1154
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 19.4 bits (38), Expect = 5.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -1
Query: 83 GCCFFFQIRLVIIINFVCKYNIAFTL 6
G CF F+ II+ + + FT+
Sbjct: 301 GGCFLFRAWESIIVGMIGAFITCFTM 326
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 19.4 bits (38), Expect = 5.5
Identities = 8/26 (30%), Positives = 11/26 (42%)
Frame = +1
Query: 127 WKYTIWNKFQFVKKLHSRRRMFLDFK 204
WK +W K + K + R FK
Sbjct: 422 WKTHVWKKGRDKKSTSKKPRRKFHFK 447
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 19.0 bits (37), Expect = 7.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 37 LCVNIILRSHY 5
L NI+LR HY
Sbjct: 233 LSYNILLRRHY 243
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 9.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 36 KVYNNDKTNLKEKTA 80
K+YN + L+EKT+
Sbjct: 21 KLYNEKEKFLEEKTS 35
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 9.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 36 KVYNNDKTNLKEKTA 80
K+YN + L+EKT+
Sbjct: 21 KLYNEKEKFLEEKTS 35
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 9.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 36 KVYNNDKTNLKEKTA 80
K+YN + L+EKT+
Sbjct: 21 KLYNEKEKFLEEKTS 35
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 18.6 bits (36), Expect = 9.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 36 KVYNNDKTNLKEKTA 80
K+YN + L+EKT+
Sbjct: 21 KLYNEKEKFLEEKTS 35
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 18.6 bits (36), Expect = 9.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 81 LLFFLSNSSC 52
LLFFL SSC
Sbjct: 7 LLFFLLLSSC 16
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 18.6 bits (36), Expect = 9.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 81 LLFFLSNSSC 52
LLFFL SSC
Sbjct: 7 LLFFLLLSSC 16
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,423
Number of Sequences: 438
Number of extensions: 1247
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3407265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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