Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13p04
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    30   1.2  
AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm rece...    29   2.7  
AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts hom...    27   8.4  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 625 EDDEVPNLVGNFDEASK 575
           ED++VP LVG+FD ASK
Sbjct: 137 EDEDVPELVGDFDAASK 153


>AF125954-5|AAD14708.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 120 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -1

Query: 449 LHVKGFRSHLCLKRMIFTFISLRSWVYELHHVL-----HLFGKSDVMYGDTKFLILSDGS 285
           +H +  R H    +++    S+ S +Y L  VL     H+ G   ++Y  T FL +S   
Sbjct: 29  IHTRATR-HFGSYKLLMASFSIFSILYALVEVLTQPIMHISGTGLMLYVGTTFLPISKEF 87

Query: 284 GNRAAPFKCNCF 249
           G+  A F C+ F
Sbjct: 88  GHFIAAFYCSTF 99


>AC006769-6|AAF60582.1|  274|Caenorhabditis elegans Hypothetical
           protein Y45G12C.6 protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -1

Query: 449 LHVKGFRSHLCLKRMIFTFISLRSWVYELHHVL-----HLFGKSDVMYGDTKFLILSDGS 285
           +H +  R H    +++    S+ S +Y L  VL     H+ G   ++Y  T FL +S   
Sbjct: 29  IHTRATR-HFGSYKLLMASFSIFSILYALVEVLTQPIMHISGTGLMLYVGTTFLPISKEF 87

Query: 284 GNRAAPFKCNCF 249
           G+  A F C+ F
Sbjct: 88  GHFIAAFYCSTF 99


>AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts
           homolog) family protein 2 protein.
          Length = 849

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
 Frame = -3

Query: 276 CSPIQMQLFLIDHQPFQHCGILILK*ALDKCYKPTVEKLIQNVLKLTLNS*GY--ECIKI 103
           C+   ++LF +++   +    L L   L+KC     EKL+++ L   L    +  E + I
Sbjct: 276 CAVEALELFQLNYNYLEKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHINERLDI 335

Query: 102 KEAFFEN--VKYFL-EKIVSHVQFCLQVFYQLKK 10
            EA FEN  ++  L + I++ +  C Q+  +L +
Sbjct: 336 VEALFENQTIRQKLRDSILARMPDCSQLARRLMR 369


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,705,586
Number of Sequences: 27780
Number of extensions: 253232
Number of successful extensions: 456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)