Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13p03
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.80 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   4.2  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    26   5.6  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   9.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.8  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 607  TYFGTCCVLYACKFSTNN 554
            TY+ +CC LY  K S+NN
Sbjct: 1996 TYYASCCFLYLFKSSSNN 2013


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 662 KYYSSYQCSGSKYFF*AXYILWDLLCI-ICV 573
           +YY S      K+ F   +  WD++C+ ICV
Sbjct: 815 QYYRSGDSISFKHLFTMVFPTWDMICVMICV 845


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 484 LFVCSCSPRITVWDNISWYKFRDH 413
           L  CSC   + +WD  +  K RD+
Sbjct: 270 LLSCSCDKSVILWDAFTGEKLRDY 293


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 369 LALRKNCFNNPGVYEWS 419
           + L K C NNP  Y WS
Sbjct: 6   IPLSKPCLNNPPTYPWS 22


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 182 NRIDMCCYSAQKIXYCIINE 123
           +R D C Y ++KI  CI NE
Sbjct: 85  SRRDTCFYCSRKIIKCICNE 104


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 390 FNNPGVYEWSLNLYQLILSQTVILGEQEQTNNTIIKVHIY 509
           F NPG+ +   +++Q ++S T  +  +    +T+I++  Y
Sbjct: 534 FQNPGLKDCIDHIFQQLISDTSSVTVRRLATSTLIRLFYY 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,469
Number of Sequences: 5004
Number of extensions: 42425
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)