Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13o24
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  RYKXEKKSFNLLITIS*KKP 98
           +Y+   K FN  ITI+  KP
Sbjct: 492 QYRLNHKPFNFHITINADKP 511


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  RYKXEKKSFNLLITIS*KKP 98
           +Y+   K FN  ITI+  KP
Sbjct: 492 QYRLNHKPFNFHITINADKP 511


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 416 FDPALNDFLFRNMLIYTFRREVNSGAGW 499
           FD  L +F  + +  Y F  ++N G+ +
Sbjct: 305 FDGRLFEFPIKFVPSYPFEEDINEGSNY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,412
Number of Sequences: 438
Number of extensions: 3455
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)