Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13o19
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF277379-1|AAF78764.1|  989|Homo sapiens vitamin D receptor-inte...    30   5.9  
BC035350-1|AAH35350.1|  524|Homo sapiens cytochrome P450, family...    30   7.8  
AC004523-1|AAC11543.1|  458|Homo sapiens F22329_1 protein.             30   7.8  

>AF277379-1|AAF78764.1|  989|Homo sapiens vitamin D
           receptor-interacting protein complex component DRIP100
           protein.
          Length = 989

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 34  PGYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD 174
           P + C R D     G +  L+ NSS      +  H  C S+ AAI++
Sbjct: 542 PDHPCFRPDSTK-VGSLVALLNNSSEMKLVQMKWHEACLSISAAILE 587


>BC035350-1|AAH35350.1|  524|Homo sapiens cytochrome P450, family 4,
           subfamily F, polypeptide 12 protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +1

Query: 223 FNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRL 402
           FN +K+ I++  +   I+ D   H  S GSS  + + +  L  LD    CI +  S  + 
Sbjct: 157 FNILKSYITIFNKSANIMLDKWQHLASEGSSCLDMFEHISLMTLDSLQKCIFSFDSHCQ- 215

Query: 403 TKPGEVISAI 432
            +P E I+ I
Sbjct: 216 ERPSEYIATI 225


>AC004523-1|AAC11543.1|  458|Homo sapiens F22329_1 protein.
          Length = 458

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +1

Query: 223 FNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRL 402
           FN +K+ I++  +   I+ D   H  S GSS  + + +  L  LD    CI +  S  + 
Sbjct: 91  FNILKSYITIFNKSANIMLDKWQHLASEGSSCLDMFEHISLMTLDSLQKCIFSFDSHCQ- 149

Query: 403 TKPGEVISAI 432
            +P E I+ I
Sbjct: 150 ERPSEYIATI 159


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,122,140
Number of Sequences: 237096
Number of extensions: 1796792
Number of successful extensions: 2639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2639
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)