Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13o12
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   171   6e-44
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   5.6  
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    26   5.6  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    26   5.6  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    26   5.6  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   7.5  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   9.9  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  171 bits (417), Expect = 6e-44
 Identities = 90/158 (56%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
 Frame = -3

Query: 667 QAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKEDPGVVSVTKIYNYYKKFGYKTQVM 488
           QA+ACAEANVTLISPFVGRILD+Y     + Y  +EDPGVVSV+ I+NYYKKFGYKT VM
Sbjct: 163 QAVACAEANVTLISPFVGRILDFYKAKNNRDYTAQEDPGVVSVSNIFNYYKKFGYKTIVM 222

Query: 487 GASFRNTGEIRELAGCDLLTISPKLLQELASSXXXXXXXXXXXXXXLNDIEKIS-LT-ES 314
           GASFRN GEI+ELAG D LTISP LL++L +S                ++EK+S LT E 
Sbjct: 223 GASFRNVGEIKELAGVDFLTISPALLEQLNNSTDAVPKKLDASKASSLNLEKVSYLTDEP 282

Query: 313 EFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIKTLL 200
           +FR+  N D MA  KLS GI  FA D   L +++K  L
Sbjct: 283 KFRFDFNNDEMAVVKLSTGIAAFAKDADTLRTILKAKL 320


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -3

Query: 316 SEFRWHLNEDHMATDKLSDGIRRFAADTRKLESLIKTLL 200
           S+F+W  N ++  +  + D  R    + RK++ +IK ++
Sbjct: 190 SKFKWDSNNNNDWSSLMKDCFRDVVNNNRKMKEIIKDVM 228


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 111 YENLIFSSTTFIWIK---FLGFYGFVILLIWXPC 19
           Y  L+F S    ++    +LG +G V +L+W PC
Sbjct: 161 YAGLLFVSQILDFLSARDWLGIFGRVRVLLWLPC 194


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 589 HTKKTYEGKEDPGVVSVTKIYNYYKKFGYK 500
           HT  T EG+E+ G VS T + + ++    K
Sbjct: 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLK 330


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 321 VSDIFSMSFKAANFGSRTFFSG-LSLLAN 404
           +SDI S S K AN  S+  FSG L+  AN
Sbjct: 173 LSDISSSSMKKANNSSKPLFSGKLTFKAN 201


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 535 KIYNYYKKFGYKTQVMGASFRNTGEIRELAGCDLLTISPKLLQELASS 392
           +I+    + G+   + GA    +G I  + G D+L   P+L+  L +S
Sbjct: 701 EIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS 748


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
 Frame = -3

Query: 541 VTKIYNYYKKFGYKTQVM------GASFRNTGEIREL-AGCDLLTISPKLLQEL 401
           V +I+   +KF Y++ V       GA  R   +IR++  GCDLL+ +P  L +L
Sbjct: 268 VCQIHEESRKFCYRSWVRPCAVYGGADIR--AQIRQIDQGCDLLSATPGRLVDL 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,713
Number of Sequences: 5004
Number of extensions: 50851
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)