Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13o08
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.2  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    23   2.1  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    23   2.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 330 QYGHRHYQWSYLAHGHRVPSH 392
           Q+ +  + W+   HGH   SH
Sbjct: 278 QHEYNSFNWTANGHGHNTSSH 298


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 339 GRIACGVIGLAKI*IHTFFICWAWYY 262
           G+     + +  I +  FF+CW  YY
Sbjct: 267 GKAKVRTLKMTIIIVLVFFVCWTPYY 292


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 339 GRIACGVIGLAKI*IHTFFICWAWYY 262
           G+     + +  I +  FF+CW  YY
Sbjct: 267 GKAKVRTLKMTIIIVLVFFVCWTPYY 292


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 457 PDLSSWT*QHHWSHFSCPC 401
           P L+  T Q H +H++C C
Sbjct: 69  PCLNGATCQDHTTHYTCHC 87


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 357 SYLAHGHRVPSHQGQHGQLKC 419
           S L+HGHRV      H  L C
Sbjct: 447 SVLSHGHRVIYSTVGHWYLDC 467


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,989
Number of Sequences: 336
Number of extensions: 3140
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)