Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13o08
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 149 3e-37
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.0
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 3.0
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 3.9
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 5.2
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 5.2
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 6.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 6.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 6.8
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 149 bits (361), Expect = 3e-37
Identities = 70/108 (64%), Positives = 82/108 (75%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
H+H+FGDNTNGCTSAG HFNPE + HG ++AVRHVGDLGN+E+ + G K + DS I
Sbjct: 47 HIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVI 105
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLA 307
SL G NSIIGRT+V+HA DDLG G E S TGNAG R ACGVIG+A
Sbjct: 106 SLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +1
Query: 277 TYEKCMYLNLGQANDSTSNTATGITSGLT*LMATE----SQVIRVSMDN*SATNDAVRSM 444
T++K N + D+ S+ T + G++ + + S + ++ ++ S+TND +R +
Sbjct: 492 TFDKAQLSNTEDSYDNISH-GTSYSEGVSSIHMVKGERGSNNLELTSESLSSTNDTIRRL 550
Query: 445 KRDL 456
+RDL
Sbjct: 551 QRDL 554
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 328 LWSHWLGQDLNTYIFHMLGLVLQ 260
+WS W+ +L T FHM + LQ
Sbjct: 424 MWSPWIIDNLGTVSFHMYVIYLQ 446
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.2 bits (55), Expect = 3.9
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = -1
Query: 519 DLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAG 340
D+ NI+ ++ + ++++ Q++ N + R + + L L H L+ G AG
Sbjct: 431 DIINIDIEKEKTIEEIAMGFIQVA----NETMCRPIRKLTESRGLDLSAHHLA-VFGGAG 485
Query: 339 GRIACGV---IGLAKI*IHTF 286
G+ AC + + + KI IH +
Sbjct: 486 GQHACAIASLLNIEKIIIHKY 506
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 537 AVRHVGDLGNIEAIEDSGVTKVSIQDSQ 454
A R DL NI +ED V+ S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 575 STLKNKIMVVPVLLYAMSATSVTLRQLKTLESLK 474
STLK + + PV L A+ ++LR L ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 407 TTKVRPMMLLGP*REIWESWIDTLVTP 487
+T + P LL E+WE DT +TP
Sbjct: 78 STLIEPNYLLTAWHELWEELQDTYMTP 104
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 581 LISTLKNKIMVVPVLLYAMSATSVTLRQLKTLES-LKYQSKIPRSLFM 441
L++T + + +PVLLY + ++ + L++ ES + + KI +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +1
Query: 226 ISIQNIMKSLNIVVPSPTYEKCMYLNLGQANDSTSNTATGITSGLT*LMA------TESQ 387
+ ++N+ SLN+ + L + DS + + SGL L A TE++
Sbjct: 864 LDLKNLRSSLNVAISDNDQILTQLAELSKNYDSLEQESAQLNSGLKSLEAEKQLLHTENE 923
Query: 388 VIRVSMDN*SATNDAVRSMKRDLG 459
+ + +D + S DLG
Sbjct: 924 ELHIRLDKLTGKLKIEESKSSDLG 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,508
Number of Sequences: 5004
Number of extensions: 49778
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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