Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13o08
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 165 3e-41
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 160 1e-39
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 151 4e-37
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 119 2e-27
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 40 0.002
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 4.0
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 5.3
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 5.3
03_06_0131 - 31900700-31900992,31901039-31901720 28 7.0
01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997 27 9.3
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 165 bits (400), Expect = 3e-41
Identities = 72/107 (67%), Positives = 82/107 (76%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
H+H GD TNGC S G H+NP ++HG P RH GDLGN+ A ED GV + + DSQI
Sbjct: 163 HIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVANIHVVDSQI 221
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 310
L GPNSIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 222 PLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 160 bits (388), Expect = 1e-39
Identities = 73/107 (68%), Positives = 81/107 (75%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
HVH GD TNGC S G HFNP ++HG P RH GDLGNI A D GV V++ DSQI
Sbjct: 45 HVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNVSDSQI 103
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 310
L G +SIIGR +VVHADPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 104 PLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 151 bits (366), Expect = 4e-37
Identities = 68/110 (61%), Positives = 78/110 (70%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
H+HEFGD TNGC S G HFNP HG P VRH GDLGNI A + GV + +I D QI
Sbjct: 95 HLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAE-GVAEATIVDKQI 153
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 301
L GPNS++GR VVH DDLG GGHELS +TGNAGGR+ACGV+GL +
Sbjct: 154 PLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 119 bits (287), Expect = 2e-27
Identities = 54/85 (63%), Positives = 62/85 (72%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
H+H FGD TNGC S G HFNP + HG PS RHVGDLGNI A +D GV + I+D QI
Sbjct: 55 HIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKD-GVADIFIKDLQI 113
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLG 376
SL GP+SI+GR +VVHAD DDLG G
Sbjct: 114 SLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = -1
Query: 627 VHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQIS 448
++EFGD T G S G +NP P +GDLG +EA E G + S ++
Sbjct: 208 INEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEAGE-KGEAQFSASKEKLK 260
Query: 447 LHGPNSIIGRTLVVHA--DPDDLGLGGHELSKTTG 349
+ +IGR++ ++A D D G+ ++++ G
Sbjct: 261 V---VDLIGRSIALYATEDRSDPGIAAAVIARSAG 292
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 441 GPNSIIGRTLVVHADPDDLGLGG 373
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 5.3
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = -1
Query: 585 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 427
GA +PE H G V D L NI A+ G+ V+ D+++SL
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281
Query: 426 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 316
G +V D GG+E S G A G + GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -1
Query: 612 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 433
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 519 DLGNIEAIEDSGVTKVSIQDSQISLHGPNS 430
D+ ++ + DSG +I +S HGPNS
Sbjct: 120 DVDHLSILTDSGAVHRAISGEPVSEHGPNS 149
>01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997
Length = 387
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 615 GDNTNGCTSAGAHFNPEKQDHGGPSSAVRHV 523
G+N NG S G H N + G P S + +V
Sbjct: 111 GNNNNGYRSQGVHANESWRIPGQPDSCIENV 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,188,645
Number of Sequences: 37544
Number of extensions: 317056
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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