Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13o08
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               154   6e-38
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                80   2e-15
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                55   4e-08
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  29   3.1  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           28   7.2  
SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)             28   7.2  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         28   7.2  
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  154 bits (373), Expect = 6e-38
 Identities = 67/109 (61%), Positives = 87/109 (79%)
 Frame = -1

Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
           H+H +GDNTNGC SAG HFNP K++HGGPS   RHVGDLGN+ A +D G   + + D+ +
Sbjct: 45  HIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGNVVAGDD-GKACIDMTDALV 103

Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAK 304
           +L G +S++GR++VVHAD DDLG GGHE SKTTG+AGGR+ACGVIG+ +
Sbjct: 104 TLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIGITQ 152


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 39/71 (54%), Positives = 49/71 (69%)
 Frame = -1

Query: 528 HVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTG 349
           HVGDLGNI A ++   T    +D  + +     IIGR +VVHAD DDLG GGHELSK+TG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 348 NAGGRIACGVI 316
           N+G R+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = -1

Query: 555 HGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLV 409
           HG P    RH+GDLGNIEA + +G+  VSI D  +SL G  SIIGR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/90 (25%), Positives = 42/90 (46%)
 Frame = -1

Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
           H++    + + C +  +  +  +  HGG  S++     +GN  +    G    S+ D+Q 
Sbjct: 312 HLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDDNQS 363

Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELS 361
           SL G  SI+G     H + +  GLG ++ S
Sbjct: 364 SLGGNQSILGDNQSSHGN-EKSGLGDNQSS 392


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 606  TNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIED 490
            T+  +SA  HF+    DH  P S V    D+  +E+  +
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSE 3243


>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 353 LVMPVAVLLVESLAWPRFKYIHFSYVGLGTTIFSD 249
           +++ +A L VE   W  F+ I+F ++ L T  F D
Sbjct: 366 MLLVLAALAVEYEGWTYFQGIYFGFITLSTIGFGD 400


>SB_33198| Best HMM Match : 7tm_1 (HMM E-Value=9.80909e-45)
          Length = 762

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 154 TIRWTNITVKDTGFFIYVG-EI*TKISIQNI-MKSLNIVVPSPTYEKCMYLNL 306
           T RW N+    T  F+ +  E  T      I +KSL  V+P    E C+YLN+
Sbjct: 460 TNRWQNVRAAPTHSFLNIRREGGTGNQGTAIALKSLLCVIPDTVSEDCLYLNI 512


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 525 VGDL-GNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVV 406
           VGDL G    I+ + ++ V   DS + L G + I GRTLV+
Sbjct: 142 VGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIFGRTLVL 181


>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 487 WSH*SINPRFPDLSSWT*QHHWSHFSCPC 401
           WS  S N RFP    WT    WS+ + PC
Sbjct: 395 WSS-SANSRFPVDGDWTEWSTWSYCNKPC 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,733,960
Number of Sequences: 59808
Number of extensions: 362845
Number of successful extensions: 778
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)