Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13o08
         (630 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismuta...   141   1e-35
AY745232-1|AAU93511.1|   75|Anopheles gambiae SOD3A protein.          108   2e-25
AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.          100   8e-23
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    27   0.37 
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    26   0.86 
AY193728-1|AAO62001.1|  519|Anopheles gambiae cytochrome P450 CY...    24   4.6  
AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8...    23   6.1  

>AY524130-1|AAS17758.1|  211|Anopheles gambiae superoxide dismutase
           2 protein.
          Length = 211

 Score =  141 bits (342), Expect = 1e-35
 Identities = 61/107 (57%), Positives = 79/107 (73%)
 Frame = -1

Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
           H+HE GD T+GC S G H+NP+K  HG P+  VRHVGDLGNI A +++G+ K S  D+ +
Sbjct: 65  HIHEKGDLTDGCASTGGHYNPDKVSHGAPNDQVRHVGDLGNIAA-DENGIAKTSYSDTVV 123

Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGL 310
           SL+G  S+IGR +V+HA+ DDLG   H  S  TGNAGGR+ACGVIG+
Sbjct: 124 SLYGARSVIGRAIVIHAEVDDLGKTNHPDSLKTGNAGGRVACGVIGI 170


>AY745232-1|AAU93511.1|   75|Anopheles gambiae SOD3A protein.
          Length = 75

 Score =  108 bits (259), Expect = 2e-25
 Identities = 49/76 (64%), Positives = 63/76 (82%)
 Frame = -1

Query: 528 HVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTG 349
           H GD+GNI A +++G  KV +  +QI+L G  +++GR+LVVHADPDDLG+GGHELSKTTG
Sbjct: 1   HAGDMGNIVA-DENGEAKVDLTATQIALSGALNVVGRSLVVHADPDDLGVGGHELSKTTG 59

Query: 348 NAGGRIACGVIGLAKI 301
           +AG R+ACGVIGL KI
Sbjct: 60  DAGARLACGVIGLCKI 75


>AY745233-1|AAU93512.1|  100|Anopheles gambiae SOD3B protein.
          Length = 100

 Score = 99.5 bits (237), Expect = 8e-23
 Identities = 47/91 (51%), Positives = 62/91 (68%)
 Frame = -1

Query: 576 FNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHAD 397
           +NP+  DHG P  A  HVGDLGNI A   +G+ K+ I + +++L G  SIIGRTL +   
Sbjct: 1   YNPDGNDHGAPDDANCHVGDLGNIVAYS-TGLAKIQIANKKLTLVGDRSIIGRTLSISEY 59

Query: 396 PDDLGLGGHELSKTTGNAGGRIACGVIGLAK 304
            DDLG G H+ SKTTGN+G  IAC +IG+A+
Sbjct: 60  EDDLGRGKHDYSKTTGNSGNCIACAIIGVAR 90


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 27.5 bits (58), Expect = 0.37
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = -1

Query: 612  DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 433
            D+T    S G+H N   +D     SA    G+     + ED G+ +  + D      GP 
Sbjct: 1188 DDTASIKSYGSHKNRPFKDESHKGSAETMEGEEKRDASKEDLGIDE-ELDDEGEGDEGP- 1245

Query: 432  SIIGRTLVVHADPDDL 385
              +   L++HA+ D++
Sbjct: 1246 --LDGELIIHAEEDEV 1259


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 309 PSQ*LHKQYGHR-HYQWSYLAHGHRVPSHQGQHGQLK 416
           P Q   +Q  HR H QW +  +G +     G H Q K
Sbjct: 260 PQQSAQRQPAHRQHQQWPHQQNGQQQQQRMGIHQQEK 296


>AY193728-1|AAO62001.1|  519|Anopheles gambiae cytochrome P450
           CYPm3r5 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 501 AIEDSGVTK-VSIQDSQISLHGPNSIIGRTLVVHADPD 391
           AI +  VTK   I D+ ++LH    I+     +H DPD
Sbjct: 382 AILERIVTKPYRIPDTSVTLHPGMKIMIPAYAIHHDPD 419


>AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8
           protein.
          Length = 700

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 569 LKNKIMVVPVLLYAMSATSVTLRQLKT 489
           L+NK  + P  +  +S ++VTL  L+T
Sbjct: 427 LRNKARLAPYTMAELSNSNVTLEALET 453


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,722
Number of Sequences: 2352
Number of extensions: 13264
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61468785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)