Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13o08
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 145 2e-35
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 145 2e-35
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 145 2e-35
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 145 2e-35
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 140 7e-34
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 136 2e-32
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 134 4e-32
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 134 4e-32
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 32 0.39
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z73427-9|CAA97805.1| 213|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z68303-11|CAA92643.1| 213|Caenorhabditis elegans Hypothetical p... 28 4.8
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 28 6.3
AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively... 28 6.3
AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively... 28 6.3
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 28 6.3
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 145 bits (352), Expect = 2e-35
Identities = 67/111 (60%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
HVH++GD+TNGC SAG HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ +
Sbjct: 46 HVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLV 104
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 307
+L+GPN+++GR++VVHA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 105 TLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 145 bits (352), Expect = 2e-35
Identities = 67/111 (60%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
HVH++GD+TNGC SAG HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ +
Sbjct: 46 HVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLV 104
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 307
+L+GPN+++GR++VVHA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 105 TLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 145 bits (352), Expect = 2e-35
Identities = 67/111 (60%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
HVH++GD+TNGC SAG HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ +
Sbjct: 46 HVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLV 104
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 307
+L+GPN+++GR++VVHA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 105 TLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 145 bits (352), Expect = 2e-35
Identities = 67/111 (60%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
HVH++GD+TNGC SAG HFNP + HGGP S +RHVGDLGN+EA D GV K+ + D+ +
Sbjct: 68 HVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLV 126
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 307
+L+GPN+++GR++VVHA DDLG G E SK TGNAG R ACGVI LA
Sbjct: 127 TLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 177
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 140 bits (339), Expect = 7e-34
Identities = 67/111 (60%), Positives = 80/111 (72%), Gaps = 3/111 (2%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
H+H++GD+T+GCTSAG HFNP K +HGG S VRHVGDLGN+EA D GV K+ D +
Sbjct: 66 HIHQYGDSTDGCTSAGPHFNPCKMNHGGRDSVVRHVGDLGNVEAGAD-GVAKIKFSDKVV 124
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLG---GHELSKTTGNAGGRIACGVIGLA 307
SL G N++IGR++VVH D DDLG G E S TGNAG R ACGVI LA
Sbjct: 125 SLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGNAGARAACGVIALA 175
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 136 bits (328), Expect = 2e-32
Identities = 62/109 (56%), Positives = 76/109 (69%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
H+HE GD NGC SAG H+NP K HG P + RH+GDLGNIE+ SG T +S+ DS
Sbjct: 70 HIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIES-PASGDTLISVSDSLA 128
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIGLAK 304
SL G SIIGR++V+H DDLG G + SKTTGNAG R+ACG IG+ +
Sbjct: 129 SLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGIVE 177
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 134 bits (325), Expect = 4e-32
Identities = 62/106 (58%), Positives = 74/106 (69%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
H+HE GD NGC SAG H+NP K HG P + RH+GDLGNIE+ SG T +S+ DS
Sbjct: 70 HIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIES-PASGDTLISVSDSLA 128
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIG 313
SL G SIIGR++V+H DDLG G + SKTTGNAG R+ACG IG
Sbjct: 129 SLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 134 bits (325), Expect = 4e-32
Identities = 62/106 (58%), Positives = 74/106 (69%)
Frame = -1
Query: 630 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 451
H+HE GD NGC SAG H+NP K HG P + RH+GDLGNIE+ SG T +S+ DS
Sbjct: 70 HIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIES-PASGDTLISVSDSLA 128
Query: 450 SLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVIG 313
SL G SIIGR++V+H DDLG G + SKTTGNAG R+ACG IG
Sbjct: 129 SLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 31.9 bits (69), Expect = 0.39
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 324 HKQYGHRHYQWSYLAHGHRVPSHQGQHGQ 410
H +G H HGH P+H G HG+
Sbjct: 580 HGSHGVHHGHHESHGHGHHAPAHHGHHGE 608
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 324 HKQYGHRHYQWSYLAHGHRVPSHQGQHGQ 410
H H H++ S+ HGH P+H G HG+
Sbjct: 434 HAPAHHGHHE-SH-GHGHHSPAHHGHHGE 460
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
protein T01D3.3b protein.
Length = 1011
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 627 VHEFGDNTNGCTSAGAHFN 571
+H+FGD++ GC+ GA F+
Sbjct: 927 LHQFGDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 627 VHEFGDNTNGCTSAGAHFN 571
+H+FGD++ GC+ GA F+
Sbjct: 718 LHQFGDSSEGCSRVGAPFS 736
>Z73427-9|CAA97805.1| 213|Caenorhabditis elegans Hypothetical
protein F58B3.9 protein.
Length = 213
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = -1
Query: 384 GLGGHELSKTTGNAGGRIACGVIGLAKI*IHTFFICWAWYYNI**LHDILNTNFCLNFTY 205
G G+ + T A GR+ CG+ G+ K+ + + + NI ++D NT+ NF
Sbjct: 42 GFQGNGAGELTYEAKGRLICGLTGVDKVRV-VLWDRFRGRENI--IYDETNTDVVGNFR- 97
Query: 204 INKKPSVFDGNI 169
+ + FDGN+
Sbjct: 98 LRATRNGFDGNL 109
>Z68303-11|CAA92643.1| 213|Caenorhabditis elegans Hypothetical
protein F58B3.9 protein.
Length = 213
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = -1
Query: 384 GLGGHELSKTTGNAGGRIACGVIGLAKI*IHTFFICWAWYYNI**LHDILNTNFCLNFTY 205
G G+ + T A GR+ CG+ G+ K+ + + + NI ++D NT+ NF
Sbjct: 42 GFQGNGAGELTYEAKGRLICGLTGVDKVRV-VLWDRFRGRENI--IYDETNTDVVGNFR- 97
Query: 204 INKKPSVFDGNI 169
+ + FDGN+
Sbjct: 98 LRATRNGFDGNL 109
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 225 FCLNFTYINKK-PSVFDGNISPSD 157
F NFT I K PS+FD N+SP D
Sbjct: 1713 FNQNFTTIQPKFPSLFDCNLSPDD 1736
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 225 FCLNFTYINKK-PSVFDGNISPSD 157
F NFT I K PS+FD N+SP D
Sbjct: 1713 FNQNFTTIQPKFPSLFDCNLSPDD 1736
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 414 LVVHADPDDLGLGGHELSKTTGNAGGR 334
L+ H P+DL + ELSK G+ GR
Sbjct: 484 LITHVKPEDLDVLASELSKMGGHHNGR 510
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 414 LVVHADPDDLGLGGHELSKTTGNAGGR 334
L+ H P+DL + ELSK G+ GR
Sbjct: 499 LITHVKPEDLDVLASELSKMGGHHNGR 525
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 414 LVVHADPDDLGLGGHELSKTTGNAGGR 334
L+ H P+DL + ELSK G+ GR
Sbjct: 494 LITHVKPEDLDVLASELSKMGGHHNGR 520
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 414 LVVHADPDDLGLGGHELSKTTGNAGGR 334
L+ H P+DL + ELSK G+ GR
Sbjct: 499 LITHVKPEDLDVLASELSKMGGHHNGR 525
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 225 FCLNFTYINKK-PSVFDGNISPSD 157
F NFT I K PS+FD N+SP D
Sbjct: 1713 FNQNFTTIQPKFPSLFDCNLSPDD 1736
>AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 728
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 414 LVVHADPDDLGLGGHELSKTTGNAGGR 334
L+ H P+DL + ELSK G+ GR
Sbjct: 131 LITHVKPEDLDVLASELSKMGGHHNGR 157
>AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 792
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 414 LVVHADPDDLGLGGHELSKTTGNAGGR 334
L+ H P+DL + ELSK G+ GR
Sbjct: 204 LITHVKPEDLDVLASELSKMGGHHNGR 230
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 414 LVVHADPDDLGLGGHELSKTTGNAGGR 334
L+ H P+DL + ELSK G+ GR
Sbjct: 499 LITHVKPEDLDVLASELSKMGGHHNGR 525
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,386
Number of Sequences: 27780
Number of extensions: 277289
Number of successful extensions: 753
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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