Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13o06
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 191 4e-49
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 191 4e-49
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 191 4e-49
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 48 8e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 48 8e-06
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 2.8
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 4.9
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 4.9
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 4.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 191 bits (465), Expect = 4e-49
Identities = 88/114 (77%), Positives = 98/114 (85%)
Frame = -3
Query: 597 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKST 418
DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK
Sbjct: 294 DSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKV 353
Query: 417 EVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 354 EDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 191 bits (465), Expect = 4e-49
Identities = 88/114 (77%), Positives = 98/114 (85%)
Frame = -3
Query: 597 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKST 418
DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK
Sbjct: 328 DSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKV 387
Query: 417 EVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 388 EDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 191 bits (465), Expect = 4e-49
Identities = 88/114 (77%), Positives = 98/114 (85%)
Frame = -3
Query: 597 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKST 418
DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK
Sbjct: 328 DSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKV 387
Query: 417 EVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 388 EDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 66.1 bits (154), Expect = 2e-11
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Frame = -3
Query: 561 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 382
F A+V+VL H I++GY+ VL +A + +D++TG+ K +K +
Sbjct: 431 FDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEK 488
Query: 381 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 256
I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 489 CIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 47.6 bits (108), Expect = 8e-06
Identities = 29/120 (24%), Positives = 52/120 (43%)
Frame = -3
Query: 615 VVMXAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDR 436
VV+ AG P K F +++ I G L H+ + C F + +++
Sbjct: 472 VVVRAGPDTLIPSK---KFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINK 528
Query: 435 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 529 SNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 47.6 bits (108), Expect = 8e-06
Identities = 29/120 (24%), Positives = 52/120 (43%)
Frame = -3
Query: 615 VVMXAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDR 436
VV+ AG P K F +++ I G L H+ + C F + +++
Sbjct: 490 VVVRAGPDTLIPSK---KFEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINK 546
Query: 435 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 256
G+ + P+ I G +A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 SNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 140 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 295
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 194 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 346
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 115 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 8
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 498 LDCHTAHIACKFAEIKEKVDRRTGKSTE 415
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 498 LDCHTAHIACKFAEIKEKVDRRTGKSTE 415
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 498 LDCHTAHIACKFAEIKEKVDRRTGKSTE 415
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,311,585
Number of Sequences: 27780
Number of extensions: 294555
Number of successful extensions: 816
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -