Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13n17
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   6.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   6.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   6.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   9.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   9.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   9.1  

>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 220 TDGPNVVVRNLYICALS 270
           TDGP +V  NL++ +++
Sbjct: 55  TDGPAIVRVNLFVRSIA 71


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 121 KDKRDKILTKNA*KNLKIMYVVLG 50
           K KR+K   K   K  K + +VLG
Sbjct: 603 KKKREKSSAKKERKATKTLAIVLG 626


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 135 SYEVISLYLGVLTTKGK 185
           S EV+++ LG L +KG+
Sbjct: 80  SNEVVAVALGALLSKGE 96


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 127

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 95 KKCIKKFKNNVCCLRSCN*CVL 30
          KK I +    VC L++   C+L
Sbjct: 26 KKTIMRILKEVCVLQANRACIL 47


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 95 KKCIKKFKNNVCCLRSCN*CVL 30
          KK I +    VC L++   C+L
Sbjct: 9  KKTIMRILKEVCVLQANRACIL 30


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 144 VISLYLGVLTTKGKIFHRAGDICSVDRRSEC 236
           V+ L + ++     I  RA D C+  + S+C
Sbjct: 541 VVVLLVIIIIMTVLILRRASDECNKKQPSDC 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,846
Number of Sequences: 438
Number of extensions: 1648
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)