Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13n08
         (611 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U17886-1|AAA80581.1|  281|Homo sapiens succinate dehydrogenase i...    32   1.8  
U17248-1|AAA81167.1|  280|Homo sapiens succinate dehydrogenase i...    32   1.8  
M32246-1|AAA35708.1|  262|Homo sapiens protein ( Human succinate...    32   1.8  
D10245-1|BAA01089.1|  262|Homo sapiens succinate-ubiquinone oxid...    32   1.8  
DQ403007-1|ABD77140.1|  255|Homo sapiens succinate dehydrogenase...    32   1.8  
BC007840-1|AAH07840.1|  280|Homo sapiens succinate dehydrogenase...    32   1.8  
AL049569-5|CAB96822.1|  280|Homo sapiens succinate dehydrogenase...    32   1.8  

>U17886-1|AAA80581.1|  281|Homo sapiens succinate dehydrogenase
           iron-protein subunit B protein.
          Length = 281

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 264 CILCICHSTSIPTLYWN 314
           CILC C STS P+ +WN
Sbjct: 187 CILCACCSTSCPSYWWN 203


>U17248-1|AAA81167.1|  280|Homo sapiens succinate dehydrogenase
           iron-protein subunit protein.
          Length = 280

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 264 CILCICHSTSIPTLYWN 314
           CILC C STS P+ +WN
Sbjct: 186 CILCACCSTSCPSYWWN 202


>M32246-1|AAA35708.1|  262|Homo sapiens protein ( Human
           succinate-ubiquinone oxidoreductase iron sulfur (Ip)
           subunit mRNA, 3' end. ).
          Length = 262

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 264 CILCICHSTSIPTLYWN 314
           CILC C STS P+ +WN
Sbjct: 168 CILCACCSTSCPSYWWN 184


>D10245-1|BAA01089.1|  262|Homo sapiens succinate-ubiquinone
           oxidoreductase iron sulfur subunit protein.
          Length = 262

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 264 CILCICHSTSIPTLYWN 314
           CILC C STS P+ +WN
Sbjct: 168 CILCACCSTSCPSYWWN 184


>DQ403007-1|ABD77140.1|  255|Homo sapiens succinate dehydrogenase
           complex subunit B protein.
          Length = 255

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 264 CILCICHSTSIPTLYWN 314
           CILC C STS P+ +WN
Sbjct: 177 CILCACCSTSCPSYWWN 193


>BC007840-1|AAH07840.1|  280|Homo sapiens succinate dehydrogenase
           complex, subunit B, iron sulfur (Ip) protein.
          Length = 280

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 264 CILCICHSTSIPTLYWN 314
           CILC C STS P+ +WN
Sbjct: 186 CILCACCSTSCPSYWWN 202


>AL049569-5|CAB96822.1|  280|Homo sapiens succinate dehydrogenase
           complex, subunit B, iron sulfur (Ip) protein.
          Length = 280

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 264 CILCICHSTSIPTLYWN 314
           CILC C STS P+ +WN
Sbjct: 186 CILCACCSTSCPSYWWN 202


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,504,364
Number of Sequences: 237096
Number of extensions: 1146338
Number of successful extensions: 1196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)