Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13n08
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.58 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 62  ITRHYGL*TQPNDSLRFCLMNH*IQFTFLVFL---I*TWIF 175
           I  H+ +  +PN SL + L    I FTFL  L   +  WIF
Sbjct: 33  IPEHWLVYPEPNPSLHYLLALLYILFTFLALLGNGLVIWIF 73


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 313 FQYKVGIDVEWQMHKIQIC 257
           +Q KVG+    + HK+++C
Sbjct: 452 YQTKVGLITILRNHKVEVC 470


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 196 SLRLLIIQSVSLVFLSAMSFSKFVSYAFAIRHQYLLYIGIYPITKTWI 339
           SL   I+ S+++ FL         S A  +  +YLL+  I      WI
Sbjct: 282 SLCSSILLSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVTLSIWI 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,935
Number of Sequences: 438
Number of extensions: 2789
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)