Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13n04
         (351 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC090048-1|AAH90048.1|   82|Homo sapiens ubiquinol-cytochrome c ...    94   1e-19
BC001390-1|AAH01390.1|   82|Homo sapiens ubiquinol-cytochrome c ...    94   1e-19
D50369-1|BAA23321.1|   93|Homo sapiens low molecular mass ubiqui...    79   5e-15
BC068561-1|AAH68561.1|  477|Homo sapiens solute carrier family 2...    30   2.4  
BC014519-1|AAH14519.1|  477|Homo sapiens solute carrier family 2...    30   2.4  
AL390036-2|CAI13623.1|  477|Homo sapiens solute carrier family 2...    30   2.4  
AL359258-2|CAI14513.1|  477|Homo sapiens solute carrier family 2...    30   2.4  
AJ619987-1|CAF04493.1|  477|Homo sapiens small calcium-binding m...    30   2.4  
AJ619961-1|CAF04058.1|  458|Homo sapiens mitochondrial ATP-Mg/Pi...    30   2.4  
BC131782-1|AAI31783.1| 1319|Homo sapiens FAM135A protein protein.      28   9.5  
AL078591-1|CAB89265.1| 1515|Homo sapiens KIAA1411 protein.             28   9.5  
AK023639-1|BAE46615.1|  523|Homo sapiens protein ( Homo sapiens ...    28   9.5  
AK002067-1|BAA92066.1|  139|Homo sapiens protein ( Homo sapiens ...    28   9.5  
AB037832-1|BAA92649.1| 1522|Homo sapiens KIAA1411 protein protein.     28   9.5  

>BC090048-1|AAH90048.1|   82|Homo sapiens ubiquinol-cytochrome c
           reductase, complex III subunit VII, 9.5kDa protein.
          Length = 82

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/82 (50%), Positives = 55/82 (67%)
 Frame = -2

Query: 314 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIY 135
           MG+ FG L ++R +++Y +S  EQRAY    + GIPN+ RR RES F+VVP F++ YLIY
Sbjct: 1   MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 60

Query: 134 EGVEREHHRLSRKNPADFENDQ 69
                E  R  RKNPA +END+
Sbjct: 61  TWGTEEFERSKRKNPAAYENDK 82


>BC001390-1|AAH01390.1|   82|Homo sapiens ubiquinol-cytochrome c
           reductase, complex III subunit VII, 9.5kDa protein.
          Length = 82

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/82 (50%), Positives = 55/82 (67%)
 Frame = -2

Query: 314 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIY 135
           MG+ FG L ++R +++Y +S  EQRAY    + GIPN+ RR RES F+VVP F++ YLIY
Sbjct: 1   MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 60

Query: 134 EGVEREHHRLSRKNPADFENDQ 69
                E  R  RKNPA +END+
Sbjct: 61  TWGTEEFERSKRKNPAAYENDK 82


>D50369-1|BAA23321.1|   93|Homo sapiens low molecular mass
           ubiquinone-binding protein protein.
          Length = 93

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
 Frame = -2

Query: 314 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVVPPFIIGYLIY 135
           MG+ FG L ++R +++Y +S  EQRAY    + GIPN+ RR RES F+VVP F++ YLIY
Sbjct: 1   MGREFGNLTRMRHVISYSLSPFEQRAYPHVFTKGIPNVLRRIRESFFRVVPQFVVFYLIY 60

Query: 134 EGVEREHHRLSRK--NPADFENDQ 69
                E  R  R+   P    N+Q
Sbjct: 61  TWGTEEFERSKRRIQLPMKMTNEQ 84


>BC068561-1|AAH68561.1|  477|Homo sapiens solute carrier family 25
           (mitochondrial carrier; phosphate carrier), member 24
           protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 215 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 120
           GIP ++R    +  KV+P   I Y++YE +++
Sbjct: 439 GIPGLYRGITPNFMKVLPAVGISYVVYENMKQ 470


>BC014519-1|AAH14519.1|  477|Homo sapiens solute carrier family 25
           (mitochondrial carrier; phosphate carrier), member 24
           protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 215 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 120
           GIP ++R    +  KV+P   I Y++YE +++
Sbjct: 439 GIPGLYRGITPNFMKVLPAVGISYVVYENMKQ 470


>AL390036-2|CAI13623.1|  477|Homo sapiens solute carrier family 25
           (mitochondrial carrier; phosphate carrier), member 24
           protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 215 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 120
           GIP ++R    +  KV+P   I Y++YE +++
Sbjct: 439 GIPGLYRGITPNFMKVLPAVGISYVVYENMKQ 470


>AL359258-2|CAI14513.1|  477|Homo sapiens solute carrier family 25
           (mitochondrial carrier; phosphate carrier), member 24
           protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 215 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 120
           GIP ++R    +  KV+P   I Y++YE +++
Sbjct: 439 GIPGLYRGITPNFMKVLPAVGISYVVYENMKQ 470


>AJ619987-1|CAF04493.1|  477|Homo sapiens small calcium-binding
           mitochondrial carrier 1 protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 215 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 120
           GIP ++R    +  KV+P   I Y++YE +++
Sbjct: 439 GIPGLYRGITPNFMKVLPAVGISYVVYENMKQ 470


>AJ619961-1|CAF04058.1|  458|Homo sapiens mitochondrial ATP-Mg/Pi
           carrier protein.
          Length = 458

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 215 GIPNIFRRFRESVFKVVPPFIIGYLIYEGVER 120
           GIP ++R    +  KV+P   I Y++YE +++
Sbjct: 420 GIPGLYRGITPNFMKVLPAVGISYVVYENMKQ 451


>BC131782-1|AAI31783.1| 1319|Homo sapiens FAM135A protein protein.
          Length = 1319

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 120  PFNSFIYQVSNDEGRDYFKNALTKSS 197
            P  +F+Y++SN  G  YFKN +   S
Sbjct: 1201 PRQTFLYKLSNKAGLHYFKNVVLVGS 1226


>AL078591-1|CAB89265.1| 1515|Homo sapiens KIAA1411 protein.
          Length = 1515

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 120  PFNSFIYQVSNDEGRDYFKNALTKSS 197
            P  +F+Y++SN  G  YFKN +   S
Sbjct: 1397 PRQTFLYKLSNKAGLHYFKNVVLVGS 1422


>AK023639-1|BAE46615.1|  523|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13577 fis, clone PLACE1008748. ).
          Length = 523

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 120 PFNSFIYQVSNDEGRDYFKNALTKSS 197
           P  +F+Y++SN  G  YFKN +   S
Sbjct: 451 PRQTFLYKLSNKAGLHYFKNVVLVGS 476


>AK002067-1|BAA92066.1|  139|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11205 fis, clone PLACE1007843. ).
          Length = 139

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 120 PFNSFIYQVSNDEGRDYFKNALTKSS 197
           P  +F+Y++SN  G  YFKN +   S
Sbjct: 21  PRQTFLYKLSNKAGLHYFKNVVLVGS 46


>AB037832-1|BAA92649.1| 1522|Homo sapiens KIAA1411 protein protein.
          Length = 1522

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 120  PFNSFIYQVSNDEGRDYFKNALTKSS 197
            P  +F+Y++SN  G  YFKN +   S
Sbjct: 1404 PRQTFLYKLSNKAGLHYFKNVVLVGS 1429


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,293,560
Number of Sequences: 237096
Number of extensions: 790699
Number of successful extensions: 1384
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)