Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13n02
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.4  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   3.1  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   4.1  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   7.2  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   7.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   9.5  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   9.5  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 339  LERPGTELHRPDRP---ISLFEGVIGRLYLVEELAHAMD 232
            LER GT++  PDR     SL   VI R  +  EL   +D
Sbjct: 1988 LERVGTDIQEPDRQGVMFSLVRAVIARKIMTPELYKIID 2026


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -3

Query: 558 PLCILAYQVFEDEKYLKIALHCGEVIWQRGLCTKGYSLCHGVSGNAYAFIQLFQAT 391
           P C+    + ED+++ K  +HC +       C++ + L  G   + Y  I  +  T
Sbjct: 151 PFCLDHSYILEDQQHNKCLVHCNQSRKDLLGCSQLFLLLKGSFTHEYLTIDFYNGT 206


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 570 PGFVPLCILAYQVFEDE 520
           PGF PLCIL Y + ED+
Sbjct: 585 PGF-PLCILEYGIVEDQ 600


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 48  MFLFIY*INCKLHINLTSRMIFIYYY 125
           M  FIY  N  L+ NL   ++F+Y Y
Sbjct: 276 MLSFIYFENVALYTNLLLAIVFVYNY 301


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/49 (24%), Positives = 18/49 (36%)
 Frame = -2

Query: 481 MATWTLYKRLQSLSWSQWKCLRXXXXXXXXXXXXXXVPGVLFHGVVCIR 335
           +  WT  K    L W+QW CL                  +   GV+C++
Sbjct: 111 LQNWTPEKNRYGLIWNQW-CLSHLTDEDLIAYLSRCCEAIQEKGVICVK 158


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 265 IFGGRTCSCYGRQVSSIINLVDTGD*RKNGDDTKIQPSLKEAVN 134
           ++GGRT SC  + +  + N++   D  + GD +   PS K+ ++
Sbjct: 610 VYGGRTLSCTHKDIFDLQNILRYCD--ERGDFSSF-PSFKKLIS 650


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 519 FHLQIPDRLICITARNQEPH 578
           +H Q+ +RLI +++ N+ PH
Sbjct: 17  YHKQLSERLISLSSTNEFPH 36


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 494 VERLYGNVDSVQKVTVFVMESVEMPTLS 411
           VER+YG + S  K++ +  +SVE+  +S
Sbjct: 99  VERIYGFIFSDDKISYWDEDSVELKPIS 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,868
Number of Sequences: 5004
Number of extensions: 60743
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)