Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m22
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   4.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   5.9  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   7.8  

>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -2

Query: 584 SRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTELEGIDLNKLFE 429
           S   KL+  ++  +      SK+++  +  + ++ KKD + +   DLNK FE
Sbjct: 514 SEEKKLEVSDEAPKAAPLAESKKVEEKEPFYVSKDKKDISAVNLADLNKRFE 565


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = -2

Query: 581 RVSKLKAENQVLE--EKVKTLSKQLQFLKDLFFAQAKKDTTELEGIDLNK 438
           +VS L+ ++ +++  E++  LS + +FL ++       + ++L+G DLNK
Sbjct: 400 KVSLLRIKSIIVQFSERIVFLSLEYKFLTNIQPELNDAEKSQLDGFDLNK 449


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = -2

Query: 650 NREXXXXXXXXXXXKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKD 471
           NR+           K+R +++   V KLK EN+ L++ ++ +  +L   +D      +K 
Sbjct: 115 NRDALNTKQEHLDIKKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKELIEKQ 174

Query: 470 TTELEGI 450
             + E +
Sbjct: 175 KVQKESV 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,657
Number of Sequences: 5004
Number of extensions: 46032
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)