Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m19
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    29   0.89 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    27   2.1  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    27   3.6  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   4.8  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   8.3  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   8.3  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 600  CLKGLVDFKCSENRN*RSQAKRC 532
            C+ G+ +  CSEN N RS A  C
Sbjct: 1104 CINGIFESLCSENENTRSNALSC 1126


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
 Frame = -3

Query: 689 LQRL*PRNAPRTMLKTKSLKLKQHCVPLETA----SRDWSILNVLKTEIEEAKPNGALDE 522
           L+ L  +N+ + + +T +++L++    LET     S D + ++ L+ E E       +D 
Sbjct: 482 LRLLASKNSDKALAET-NIRLQEVTKELETLRMKNSNDLNEIHDLREENEGLTLK--IDS 538

Query: 521 VFKKYCDKSAQLKGCISSVLQGVRPCVG--NEYANHINDAQNSTNQLIDFVCYKDGD 357
           + K+      +L+  I S    V    G  +EY N + D + + N++++   YKD D
Sbjct: 539 ITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/66 (24%), Positives = 36/66 (54%)
 Frame = -3

Query: 581 ILNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNEYANHINDAQN 402
           I+N+L + ++ +K    LD+V     D + +L  C++S+L+  +   G+E    +     
Sbjct: 88  IVNILSS-LDSSKWEAYLDQVVN--ADSADELTVCLTSILKKAKIIPGSEARVFVGYDSR 144

Query: 401 STNQLI 384
           ST++++
Sbjct: 145 STSEIL 150


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +1

Query: 199 ISSTFAHFSTRLKLLADSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 363
           +  +   F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 280 VGGSILEFNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 224 QQGSSYWRIPQWGSSVSNLKSMS*DSQSFAGSTQGRLP 337
           Q+ SS  R+  + S++S+LKS    SQ+  GST   +P
Sbjct: 376 QRLSSLNRVASFESNISSLKSALYASQNSDGSTSNPVP 413


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +1

Query: 517 KTSSSAPFGLASSISVFRTFKIDQSLEAVSKGTQCCFNFRDFVFSIVLGALRGHNRCNLT 696
           KT S+ PF   S++    T    + ++ V  G     N    + +             LT
Sbjct: 561 KTGSNNPFAQFSNLPSQSTAPATKPMKPVRTGDDRFSNIAQAISTGNPMGTDSFGNIGLT 620

Query: 697 KVISQHTGSE 726
           +V +QHTGS+
Sbjct: 621 RVPTQHTGSK 630


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 400 LFWASLMWFAYSLPTQGRTPCSTELIQP 483
           L WAS+  FAY LP     P +T    P
Sbjct: 128 LQWASVPLFAYDLPPDPSNPNATSSSPP 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,878
Number of Sequences: 5004
Number of extensions: 56738
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)