Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m14
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   4.7  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   8.1  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   8.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   8.1  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 532 KIKDSVNKILSNNSYHKNAEKVSIY 458
           K+KD+   +L N  Y  N+E V +Y
Sbjct: 729 KLKDTFETVLENLPYFTNSETVDLY 753


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -3

Query: 625 IPLYQDQFVTMDLAHARRRGIKVKFS----EHIAHKIKDSVNKILSNNSYHKNAEKVSIY 458
           + LY   F+ + L+ AR +     ++    +HI + + +   K+     +   AE ++ +
Sbjct: 270 LQLYSSWFIILILSDARIKENTHLYANGEGQHIKNHLLELFKKLHRTQDFLIIAESINKF 329

Query: 457 LQSTLEPQRQIL 422
           L + L+ +RQI+
Sbjct: 330 LSNPLKKERQII 341


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 491 LPQKRRKSLNLPSEHTRAPTTNPS 420
           LP +  + + +P +HT+AP+  PS
Sbjct: 63  LPVESTEDITIPRKHTKAPSGVPS 86


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 527 DLVCDMLTEFDFDPSSSR 580
           +L+  +LT+ DFDPS S+
Sbjct: 281 NLIHSLLTQIDFDPSKSK 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,371
Number of Sequences: 5004
Number of extensions: 54739
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)